Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 4e-14 seq3 84.2 2e-11 >seq1 Length=29149675 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||||||||| ||||| ||||| ||||||||| | || ||||| Sbjct 6811077 ATGCAAATTTTTGTCAAAACTCTCACCGGAAAGACCATTACCTTGGAGGTTGAGTCTTCA 6811018 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| || ||||| || || || ||| || || |||||| | ||| || || Sbjct 6811017 GACACAATT-GACAACGTGAAGGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCA 6810959 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | || | ||| || || || | || |||| | || |||| ||||| || Sbjct 6810958 GCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAGGATGGAAGGACTCTGGCGGATTACAA 6810899 Query 115465 CATTCAAAAAGAGTCTAC 115482 ||||||||| ||||| || Sbjct 6810898 CATTCAAAAGGAGTCCAC 6810881 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| |||||||| || || || ||||| || || ||| |||| ||||||| | Sbjct 6811436 ATGCAAATCTTTGTCAAGACTCTTACCGGAAAGACTATCACCCTCGAGGTGGAGTCCTCC 6811377 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | || || || || ||||| ||||| | ||| || ||| Sbjct 6811376 GATACCATTGATAACGTCAAGGCCAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCAG 6811317 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 |||||||| || | || || || || || ||||||| ||| | |||||||| ||| Sbjct 6811316 CAAAGACTGATCTTCGCCGGAAAGCAGTTGGAAGATGGACGAACACTTGCCGATTACAAC 6811257 Query 115466 ATTCAAAAAGAGTCTACTATACAT 115489 || || || || || ||| | ||| Sbjct 6811256 ATCCAGAAGGAATCCACTCTTCAT 6811233 >seq3 Length=39782674 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| ||||| | || || ||||| |||||| | ||| |||| | Sbjct 19995868 ATGCAAATTTTTGTGAAAACCTTAACCGGGAAAACAATTACCTTGGAAGTGGAGAGCTCT 19995927 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | || ||| || || ||||| || || | || || || Sbjct 19995928 GATACAATTGATAATGTGAAAGCTAAGATCCAAGATAAGGAGGGTATTCCACCGGACCAA 19995987 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || | |||| ||| || || || | ||||||| || || |||| ||||||||| Sbjct 19995988 CAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTGGCAGATTATAAC 19996047 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||||||| || || || | ||| | ||| | ||||||| || |||| Sbjct 19996048 ATTCAAAAGGAATCAACGTTGCATTTAGTGCTCCGATTGCGCGGTGGAA 19996096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425343015062800