Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq5 143 3e-29 seq6 118 1e-21 seq1 111 1e-19 seq3 102 8e-17 seq2 102 8e-17 >seq5 Length=28023477 Score = 143 bits (158), Expect = 3e-29 Identities = 162/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| ||||| | || | || || ||||| ||||||||||| ||| | || || Sbjct 21960182 ACGGAGCACAAGGTGGAGCGTGGATTCCTTCTGAATGTTGTAGTCGGCTAGTGTTCGGCC 21960123 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 |||||| |||||||| || ||| | || ||||||||||||||||||||||||||||| || Sbjct 21960122 GTCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGAGGGATTCCTTCCTT 21960063 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| ||| || ||||| | || | ||||||| | ||||| |||| || | Sbjct 21960062 GTCCTGGATCTTTGCCTTGACATTGTCGATGGTATCGGAGCTCTCGACTTCGAGAGTGAT 21960003 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||| ||||| ||||| ||||| ||||| ||||||||| Sbjct 21960002 GGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATG 21959966 >seq6 Length=29076228 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || | || | ||| |||||||| || |||||||| ||| Sbjct 26768021 GCCACCACGAAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 26768080 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| || ||||| || || || || ||| |||| | ||| ||||| ||||| || Sbjct 26768081 CAAGGTACGGCCATCCTCGAGTTGTTTTCCAGCGAAGATGAGACGTTGCTGATCCGGGGG 26768140 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| ||||| ||| || ||||| | || | ||||| | ||||| | Sbjct 26768141 AATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTATCAGACGACTCAAC 26768200 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || ||||||||||| ||||| ||||| || ||||| Sbjct 26768201 CTCAAGGGTGATTGTCTTACCGGTTAGGGTTTTAACGAAGATTTGCAT 26768248 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||||| || | || | ||| |||||||| |||||||||||||| Sbjct 26766882 CCACCACGGAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCG 26766941 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | | || || |||||||| || ||| |||| || | |||||||||||||||| Sbjct 26766942 AGAGTCCTCCCATCTTCAAGCTGCTTCCCAGCGAAGATCAACCTCTGCTGGTCCGGAGGG 26767001 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| ||| || || | | || | || |||| | ||| | Sbjct 26767002 ATGCCTTCCTTGTC-CTGAATTTTAGCTTTCACATTATCGATCGTGTCGGAGCTCTCCAC 26767060 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || || ||||| ||||| Sbjct 26767061 CTCCAAGGTGATGGTCTTTCCAGTCAGGGTCTTAACAAAAATTTGCAT 26767108 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | | ||| ||||| ||||| | ||| |||||||| |||||||||||||| | Sbjct 26767110 CCACCCCTGAGACGAAGCACCAAATGCAAGGTTGACTCCTTCTGAATGTTGTAATCAGCC 26767169 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | || || |||||||| || ||| |||| || | ||||||||| || ||| Sbjct 26767170 AGAGTCCTTCCATCTTCAAGCTGCTTCCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGG 26767229 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||||| | || | || || | | ||| | Sbjct 26767230 ATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTATCAATGGTGTCAGAGCTCTCAACC 26767289 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| | || || || ||||||||||| Sbjct 26767290 TCTAGGGTGATGGTCTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 26767336 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | ||| |||||||| || ||||| || ||| | Sbjct 26767794 CCACCACGAAGACGGAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTATAGTCGGCC 26767853 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| || ||||| || ||| |||| | |||||| ||||| ||||| Sbjct 26767854 AAAGTACGGCCATCCTCGAGTTGCTTTCCAGCGAAGATAAGACGCTGTTGGTCTGGAGGA 26767913 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || |||||||| ||| || ||| | | || | || || | ||||| | Sbjct 26767914 ATGCCCTCTTTGTCCTGGATCTTGGCCTTTACGTTGTCGATGGTGTCAGACGACTCAACC 26767973 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || ||||| ||||||||||||||| Sbjct 26767974 TCAAGGGTGATGGTCTTGCCCGTCAGGGTTTTCACGAAAATCTGCATG 26768021 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| ||| | || | ||| |||||||| || |||||||||||| Sbjct 26767338 CCACCACGAAGACGCAACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCA 26767397 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||||||| ||||| || || |||| | | || ||||| || || Sbjct 26767398 AGGGTACGACCGTCCTCTAGTTGCTTACCGGCAAAGATAAGTCTTTGTTGGTCTGGGGGA 26767457 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||||| | || | || || | | ||| | Sbjct 26767458 ATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCAACC 26767517 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| | || || || ||||||||||| Sbjct 26767518 TCTAGGGTGATGGTCTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 26767564 >seq1 Length=29149675 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | || ||||| | || | || || ||||| || || ||||||||| Sbjct 6811437 GCCACCACGGAGCCGGAGCACGAGGTGGAGAGTTGATTCCTTCTGGATATTGTAATCGGC 6811496 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || |||||| || ||||| || ||| |||| || || ||||||||||| || Sbjct 6811497 AAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCCGGGGG 6811556 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGA 131185 ||||||||| || || ||| || |||| | | | || | ||| || | ||||| | Sbjct 6811557 GATTCCTTCCTTATCCTGGATCTT-GGCTTTAACGTTGTCAATAGTGTCAGAAGACTCCA 6811615 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | || || ||||| || |||||||| || ||||||||| Sbjct 6811616 CCTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTTACAAAGATCTGCATG 6811665 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || ||| || || | || | ||| ||||||||||||||||||||||| | Sbjct 6810851 CCTCCCCTCAGACGAAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAATCCGCC 6810910 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | ||||| |||||||| || || |||| || | ||||||||| || || Sbjct 6810911 AGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 6810970 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||| | | || | || || | ||||| | Sbjct 6810971 ATGCCTTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCAACC 6811030 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| || ||||| |||||||| || ||||| ||||| Sbjct 6811031 TCCAAGGTAATGGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 6811077 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | || || ||||| || |||||||||||| Sbjct 6811210 CCACCACGGAGACGGAGGACAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCA 6811269 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | |||||| || ||| |||| | | |||||||| || || Sbjct 6811270 AGTGTTCGTCCATCTTCCAACTGCTTTCCGGCGAAGATCAGTCTTTGCTGGTCTGGGGGA 6811329 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| || ||||| | || | ||||||| |||||| | Sbjct 6811330 ATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTATCAATGGTATCGGAGGACTCCACC 6811389 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | || || ||||| ||||| || || || || |||||| Sbjct 6811390 TCGAGGGTGATAGTCTTTCCGGTAAGAGTCTTGACAAAGATTTGCATG 6811437 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/151 (73%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| || | ||| || || | || | |||||||||||| |||||||| ||||| Sbjct 6810621 AGCCACCACGGAGACGAAGGACGAGGTGAAGGGTCGACTCCTTCTGAATGTTATAATCAG 6810680 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||| | || || |||||||| || || |||| || | ||||||||| || | Sbjct 6810681 CAAGGGTCCTTCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGTG 6810740 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 | ||||| || ||||| ||| ||| ||||| Sbjct 6810741 GAATTCCCTCCTTGTC-CTGAATTTTTGCTT 6810770 >seq3 Length=39782674 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||||||||| || ||||||||||| | || || |||||||||||||| ||||| | Sbjct 19996094 CCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTGCC 19996035 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || | || | || || |||||||| || || | || || | ||| |||||||| || Sbjct 19996034 AGAGTCCTGCCA-TCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTGG 19995976 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || || || ||| || || | | || | ||||| | | ||| | Sbjct 19995975 AATACCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCAGAGCTCTCCAC 19995916 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||||| ||||||| ||||| || ||||| ||||| Sbjct 19995915 TTCCAAGGTAATTGTTTTCCCGGTTAAGGTTTTCACAAAAATTTGCAT 19995868 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | | ||||| ||||| | || || ||||| || || ||||||||| Sbjct 19995638 CCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCA 19995579 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| || ||||| || || |||| | | ||| ||||| || || Sbjct 19995578 AGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGA 19995519 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || ||||| || ||| ||| ||| || | | || | ||||| | | || | Sbjct 19995518 ATGCCCTCTTTATCT-TGAATTTTTGCCTTTACATTGTCAATTGTATCAGAGCTTTCCAC 19995460 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||||| || || |||||||||||||| || ||||| Sbjct 19995459 CTCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCAT 19995412 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | ||| |||||||||||||||||||||||| | Sbjct 4360576 CCACCACGAAGACGAAGGACAAGGTGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCC 4360635 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| | ||||| || ||| | |||| | |||||||| |||||| Sbjct 4360636 AGTGTACGTCCATCCTCCAATTGCTTTCCAGCGAAAATTAGTCTTTGCTGGTCAGGAGGG 4360695 Query 131128 ATTCCTTCTTTGTCGGTGATTTT 131150 || || || ||||| |||||| Sbjct 4360696 ATACCCTCCTTGTCCTGGATTTT 4360718 >seq2 Length=23174626 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || ||||| || |||||||| ||| | || || ||||| |||||||| || Sbjct 15735238 GTAGATTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACCATCCTCCAGCTGCTTACCG 15735297 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTG-CTT 131156 ||| |||| | |||||||||||| || || |||||||| ||||| ||| | | || ||| Sbjct 15735298 GCGAAGATGAGACGCTGCTGGTCAGGCGGTATTCCTTCCTTGTC-CTGAATCTTTGCCTT 15735356 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 || | || | ||||| | ||||| |||| || | ||| || ||||| || || Sbjct 15735357 GACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTCTTCCCGGTAAGCGT 15735416 Query 131217 TTTTACGAAAATCTGCAT 131234 ||| ||||| |||||||| Sbjct 15735417 TTTCACGAAGATCTGCAT 15735434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472011678969600