Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq6 102 7e-17 seq1 96.9 3e-15 seq5 87.8 1e-12 >seq6 Length=29076228 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || ||||| |||||||||| || | | ||| Sbjct 26767809 AGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTATAGTCGGCCAAAGTACGGCCATCC 26767868 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||| || || || | ||||| ||||||||||| ||| | |||||||||||| Sbjct 26767869 TCGAGTTGCTTTCCAGCGAAGATAAGACGCTGTTGGTCTGGAGGAATGCCCTCTTTGTCC 26767928 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | | ||||| | ||| || | |||||||| Sbjct 26767929 TGGATCTTGGC--CTTTACGTTGTCGATGGTGTCAGACGACTCAACCTCAAGGGTGATGG 26767986 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| ||||| || ||||||||||| Sbjct 26767987 TCTTGCCCGTCAGGGTTTTCACGAAAATCTGCAT 26768020 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || |||||||| ||||| | ||| ||||||| | ||| Sbjct 26767362 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCAAGGGTACGACCGTCCTCTAGTTGC 26767421 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || ||| | ||||| | |||||||| || | ||||| ||||| || || Sbjct 26767422 TTACCGGCAAAGATAAGTCTTTGTTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTA 26767481 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | | ||||| | ||| || | ||||||||| ||||||| Sbjct 26767482 GC--CTTGACGTTGTCAATGGTGTCAGAGCTCTCAACCTCTAGGGTGATGGTCTTTCCGG 26767539 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 ||| ||| ||||||||||||||||| Sbjct 26767540 TCAACGTCTTGACAAAAATCTGCAT 26767564 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | || || ||||||||||| || |||||||| || || Sbjct 26766882 CCACCACGGAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCG 26766941 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || || | || || || || | || | || ||| |||||| ||| Sbjct 26766942 AGAGTCCTCCCATCTTCAAGCTGCTTCCCAGCGAAGATCAACCTCTGCTGGTCCGGAGGG 26767001 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| ||||| ||| ||||| | | | |||||| | |||| Sbjct 26767002 ATGCCTTCCTTGTCCTGAATTTTAGCT--TTCACATTATCGATCGTGTCGGAGCTCTCCA 26767059 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||||||||| ||||| ||||| || || |||||||| |||||| Sbjct 26767060 CCTCCAAGGTGATGGTCTTTCCAGTCAGGGTCTTAACAAAAATTTGCATT 26767109 >seq1 Length=29149675 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || |||||||||||||| |||||||| || |||| || | | ||||||| || Sbjct 6810875 TGAAGGGTGGACTCCTTTTGAATGTTGTAATCCGCCAGAGTCCTTCCATCCTCCAGCTGC 6810934 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || | || ||| ||||| || | ||| || ||||| ||| | Sbjct 6810935 TTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATCTTG 6810994 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | ||||| | ||| |||| ||| ||||| |||||||| Sbjct 6810995 GCCTTCACGTTGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTAATGGTCTTTCCGGTG 6811054 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || |||||||||||||| ||||| Sbjct 6811055 AGAGTTTTGACAAAAATTTGCAT 6811077 >seq5 Length=28023477 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || | || || | || |||||||| ||||| || |||||||||||||| Sbjct 21960193 CCTCCTCTGAGACGGAGCACAAGGTGGAGCGTGGATTCCTTCTGAATGTTGTAGTCGGCT 21960134 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| | || || || || |||| | ||||| |||||| ||| Sbjct 21960133 AGTGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGAGGG 21960074 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || ||||| ||| || | | | | || ||| | ||| Sbjct 21960073 ATTCCTTCCTTGTCCTGGATCTTTGC--CTTGACATTGTCGATGGTATCGGAGCTCTCGA 21960016 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | |||||||| || || || || ||||| || || |||||||| Sbjct 21960015 CTTCGAGAGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 21959967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405087061968100