Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4 113 3e-20 seq3 109 4e-19 seq6 107 1e-18 seq17 96.9 2e-15 seq5 95.1 8e-15 seq1 95.1 8e-15 >seq4 Length=23425844 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||| ||| ||||| |||||||| |||||||||||||| | |||||||| Sbjct 10159858 AAGCCCGTTCTCTTTGCTGTAGTTTCGCTGGATAGTAGATAGGGACAATGAGAATCTCGT 10159917 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||| |||||||||||||||| Sbjct 10159918 TAATCCATTCATGCGCGTGACTAATTAGATGACGA 10159952 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| || |||||| ||| ||||||||| | ||||||||| |||| || |||||||| Sbjct 10166323 AAGGCCATTCCCTAGGCCGTGGTTTCGTTGGATAGTAGACAGGGACAGTGGGAATCTCGT 10166382 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||| |||||||||||||||||| Sbjct 10166383 TAATCCATTCATGCGCATCACTAATTAGATGACGA 10166417 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 10168116 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 10168175 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 10168176 GCCCATATTTAGCCTT 10168191 >seq3 Length=39782674 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || || ||| ||| || || ||||||||||||| ||| || | || || |||||| Sbjct 19996298 TGGAGTGTGGACTCTTTCTGGATATTGTAATCAGCCAATGTCCGACCATCCTCCAATTGT 19996239 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 ||||| ||||| || || | |||||||| | || | || |||||||| ||| || Sbjct 19996238 TTTCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGAATCCCCTCTTTGTCTTGAATCTTC 19996179 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||||||||| | | || || |||||| ||||| ||||| || || || || || Sbjct 19996178 GCCTTCACATTGTCAATGGTGTCCGAACTTTCGACTTCCAATGTGATTGTCTTCCCTGTT 19996119 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 || || |||||||| |||||||| Sbjct 19996118 AATGTCTTCACGAAAATCTGCAT 19996096 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | || | || || ||| |||||||||||| |||||||| | Sbjct 4360574 TACCACCACGAAGACGAAGGACAAGGTGGAGGGTGGACTCCTTTTGAATGTTGTAATCGG 4360633 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || |||| | || || ||||| ||||| || || ||||| | ||| || || | | Sbjct 4360634 CCAGTGTACGTCCATCCTCCAATTGCTTTCCAGCGAAAATTAGTCTTTGCTGGTCAGGAG 4360693 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| ||||| ||| || || | | || ||| || |||| Sbjct 4360694 GGATACCCTCCTTGTCCTGGATTTTAGCCTTAACGTTATCAATGGTGTCTGAGCTCTCAA 4360753 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || ||||| || || || || |||||||| ||||| ||||| ||||| Sbjct 4360754 CCTCCAATGTGATGGTCTTTCCTGTCAAGGTCTTCACAAATATTTGCAT 4360802 Score = 89.7 bits (98), Expect = 3e-13 Identities = 153/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTT----CGT 38163 ||||||||| || || ||||| || ||||||||||| | ||| |||| ||| Sbjct 19995621 CACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATC-GGCAA---GCGTTCGGCCGT 19995566 Query 38164 CGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGT 38223 | || | ||| || || ||||| || || | ||||| |||| || | ||| ||||| | Sbjct 19995565 CCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTAT 19995506 Query 38224 CCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAG 38283 | ||||||| ||| ||||| | | ||||| ||||| || || | || || | Sbjct 19995505 CTTGAATTTTTGCCTTTACATTGTCAATTGTATCAGAGCTTTCCACCTCGAGGGTGATTG 19995446 Query 38284 TTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 |||| || || | ||||| |||||||| ||||| | ||| Sbjct 19995445 TTTTGCCAGTGAGAGTTTTTACGAATATTTGCATCTGTTA 19995406 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||||||| ||||| ||||| ||||||||||| |||| | | || | || || Sbjct 19995848 ACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCGAGAGTTCGACCATCCTCG 19995789 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | || || || ||||| || || | ||||| || | || | ||||| ||||| | Sbjct 19995788 AGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGTATACCTTCCTTGTCTTGA 19995729 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| ||| ||||| | | ||||| |||||| || || | ||||| ||||| Sbjct 19995728 ATTTTAGCCTTGACATTGTCAATGGTATCAGAACTTTCCACCTCAAGGGTAATGGTTTTG 19995669 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||| ||||| ||||| ||||| Sbjct 19995668 CCAGTAAGGGTCTTCACAAATATTTGCAT 19995640 >seq6 Length=29076228 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||||||||| | || || ||| |||||| || || || ||||||| Sbjct 26767564 TACCACCACGAAGACGCAACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAATCAG 26767623 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | ||| |||| |||| ||| || |||||||| || || | |||||| || | || Sbjct 26767624 CAAGGGTACGGCCGTCCTCTAGTTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGG 26767683 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || || |||||| || ||| |||||| || | || ||||| ||| | Sbjct 26767684 GAATTCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTATCGATGGTATCAGAGGATTCGA 26767743 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || ||||||||||||| ||| || ||||| || ||||| Sbjct 26767744 CCTCGAGGGTGATGGTTTTACCCGTCAGGGTCTTAACGAAAATTTGCAT 26767792 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 13602204 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 13602145 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 13602144 GCCCATATTTAGCCTT 13602129 Score = 84.2 bits (92), Expect = 1e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | |||| || || || |||||| || || || || || | Sbjct 26767792 TACCACCACGAAGACGGAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTATAGTCGG 26767851 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || || | ||| ||||| || || || || || ||||| || | | Sbjct 26767852 CCAAAGTACGGCCATCCTCGAGTTGCTTTCCAGCGAAGATAAGACGCTGTTGGTCTGGAG 26767911 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCT--CCACTTTC 38266 | | ||| ||||||||| || || ||| || || | || || || | ||| | Sbjct 26767912 GAATGCCCTCTTTGTCCTGGATCTTGGCCTTTACGTTGTCGATGGTGTCAGACGACT--C 26767969 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||| || | || || || || ||||||| |||||||||||| ||||||||| Sbjct 26767970 AACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTTTTCACGAAAATCTGCATG 26768021 >seq17 Length=15755 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 9953 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 10012 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 10013 GCCCATATTTAGCCTT 10028 >seq5 Length=28023477 Score = 95.1 bits (104), Expect = 8e-15 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| ||||| | ||| | ||| | || || ||| ||||| ||||| ||||| || | Sbjct 21960194 ACCTCCTCTGAGACGGAGCACAAGGTGGAGCGTGGATTCCTTCTGAATGTTGTAGTCGGC 21960135 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | || |||| || | || |||||||| || || | || || || || | || Sbjct 21960134 TAGTGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGAGG 21960075 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||||| |||||| || ||| ||| ||||| | || ||||| || || || Sbjct 21960074 GATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTATCGGAGCTCTCGAC 21960015 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTACAAGCT 38329 ||| | || || || |||||||| | |||||||||||| ||||||||| || | | ||| Sbjct 21960014 TTCGAGAGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATGGTTGAGAGGCT 21959955 >seq1 Length=29149675 Score = 95.1 bits (104), Expect = 8e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG-TCGTCTAATTG 38173 ||||| || |||||| ||||| || ||||||| ||| | ||| || || | || Sbjct 6810647 TGAAGGGTCGACTCCTTCTGAATGTTATAATCAG-CAAGGGTCCTTCCATCTTCCAGCTG 6810705 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 ||||||||||| || | | || || || | || | || || |||||| |||||| Sbjct 6810706 CTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGAATTTT 6810765 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 | |||||||| | || ||||| ||| || || || || || || || || ||||| Sbjct 6810766 TGCTTTCACATTGTCGATTGTATCAGAACTCTCCACCTCCAAAGTGATGGTCTTTCCCGT 6810825 Query 38294 CAAGGTTTTCACGAATATCTGCAT 38317 |||||| |||||||| |||||||| Sbjct 6810826 CAAGGTCTTCACGAAGATCTGCAT 6810849 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || || |||| ||| | || | ||||| ||| |||||||||||| ||||||| Sbjct 6810847 CATT-CCTCCCCTCAGACGAAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAAT 6810905 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | || | | | | || || | || ||||||||||| || | | || || || | Sbjct 6810906 CCGCCAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTG 6810965 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | |||||| |||||| ||| || |||||| || | | || ||| | | Sbjct 6810966 GGGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACT 6811025 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || ||||| || || || || | ||||| || || || ||||| Sbjct 6811026 CAACCTCCAAGGTAATGGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 6811077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946424387890