Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3 244 1e-59 seq6 107 2e-18 >seq3 Length=39782674 Score = 244 bits (270), Expect = 1e-59 Identities = 587/883 (66%), Gaps = 34/883 (4%) Strand=Plus/Minus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 ||||| ||||| || || | ||| || || |||||||| || |||| || || || Sbjct 22913702 TTTTGATATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAAGGAAATCAAC 22913643 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 ||||| |||| |||||||| ||||| || ||||| | | | |||||| | || | Sbjct 22913642 TCCATCCAATCAAATGGATTTTGCACATTGTAGATTTTGTCATACCCCAATGCTCCAACC 22913583 Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 ||||||||||| |||||||| || ||| |||| | || | ||||||||| | || Sbjct 22913582 AATCTATCTGCCACAAATTCAATGTATTGGCTCATAAGGTCTCCATTCATTCCAACTAGA 22913523 Query 32550 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 32609 || || | ||| || || ||||| || ||| || || || |||| | Sbjct 22913522 GCCACCGGCAAAGCATCACAAACGAATTCCCTCTCTATATTCACAGCCTCC---ATAACA 22913466 Query 32610 GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTT-------------AAACAT 32656 |||| ||||||||| | | || | ||| | | | ||| Sbjct 22913465 -ATCTC-------CTTCACTCGATCCA--CATTCAATTTCTTCCTCAACAACGAATACAA 22913416 Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 ||||||||| ||||| || || ||||| || ||||| ||| || ||||| || || || Sbjct 22913415 CAAACATGCAAAATCACAATGAAGACCTTCATCTCTTGAAATCAACTCGTTTGAGAATGT 22913356 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGA-CGCAAATGATCCAGAAA 32775 ||||| ||||||| ||||| ||||| | ||| || || || | ||| | || || | Sbjct 22913355 TAGTCCAGGCATTAACCCACGTTTTTTCAACCAGAAAATAGAACAGAAACTA-CCTGAGA 22913297 Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--AC-CGGCGCTGT 32832 |||||||||| || || ||||| || | || | ||| || | || | | ||||| Sbjct 22913296 AGAAAATTCCCTCAACACAAGCAAATGCCAAAATCCGCTCAGCAAATGACTCCGTGCTGT 22913237 Query 32833 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 32892 || |||||||| ||||||||||||||||| || ||||| || | || || |||| Sbjct 22913236 CA---ATCCACTTCAACGCCCAATCGGCCTTCTTCTTGACACAGGGGACAGTATCAATAG 22913180 Query 32893 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 32952 ||| ||| | || || ||||| |||||| | || || || | | |||||||| Sbjct 22913179 CATGAAACAAGCGATTCTTCTCATTCGAATCTTTGATGTAAGTTTCGAGGAGAAGACTAT 22913120 Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGG 33012 |||| || ||||||||||| || || || ||||| || ||||||||| ||| | || | Sbjct 22913119 ACATCTCGGAATGAATGTTCTCGATAGCAATTTGGAAACCGTAGAAGGCTCTGACTTCAG 22913060 Query 33013 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 33072 | || ||||| | || || | || | || || || || || ||| || Sbjct 22913059 CGACTTGAACTTCCTTCATGAACCGACCGGCAAGGTTCTCCAAGACGATACCATCAGAGG 22913000 Query 33073 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 33132 | || || || || | || || | || |||| || ||||| | |||| || || Sbjct 22912999 CAGCGAAGAAGGCAAGGACGTGAGTGATGAAATGCTTCTCGTCGGAAGTTAAGGAATCCC 22912940 Query 33133 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192 ||| | |||| ||| | ||| || ||||| | ||||| || || || || |||| Sbjct 22912939 AATGGCGAGTGTCTTGAGAGAGATCGACCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCT 22912880 Query 33193 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235 | || ||||| | |||||| | |||||||||| || || || Sbjct 22912879 TCTTGTACATCTCCCAGATTTGGGGATATTGAATGGGGAACAT 22912837 >seq6 Length=29076228 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| ||||| | |||| ||| || | ||| | || | || ||| || | |||||| Sbjct 22590412 TCCTCCTTGATCAACATATCGAGCAGTATCATTGAATACCCGCAGCATAGGCAAAATACC 22590353 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| ||||| ||||| || || ||||| || || ||||||||||||| || || Sbjct 22590352 ATTAGATGTCCCATTTGTTCCACGAATATAACTACCCATGGCACGAATATTGTGGATGGA 22590293 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| || || || ||| || ||| | || || |||||| |||||||| || Sbjct 22590292 AACACCAATACCACCAGCCGACTTGCTGATAACAGCACACTCTTTTAAGGTATCATATAT 22590233 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 || ||||||||||| ||| ||||| | || |||||||| Sbjct 22590232 TCCTTCTATACTATCCTCCTTCATGCATATAAGGAAACAGCT 22590191 Score = 89.7 bits (98), Expect = 7e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| | ||||| | |||||||||||| ||||||||||| || || | | | Sbjct 22590056 GTTCCAGAGTTAAAAAGGGTAGGAGAAGCATGAGTAAACCAACGTTGTGACATTGTGTGA 22589997 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || || | |||||| || || ||||| || ||||| || || || || | ||| ||| Sbjct 22589996 TAAGTTTTAATAGCAGAATCAATATCATCTTTGTGAATACCAACGGCAACCCTCATCAAC 22589937 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 ||||| || || || || || | ||| | | |||||| | ||| || |||||| | Sbjct 22589936 ATGTGTTGGGGCCTCTCCACAACCTTCCCCTGAACTTTCAAGAGGTATGACCTTTCCAGA 22589877 Query 63647 GTTTTAAAACCAAA 63660 ||||| || ||||| Sbjct 22589876 GTTTTGAAGCCAAA 22589863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630495124000