Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3 131 1e-25 seq1 114 1e-20 seq5 109 5e-19 seq6 100 2e-16 >seq3 Length=39782674 Score = 131 bits (144), Expect = 1e-25 Identities = 167/226 (74%), Gaps = 7/226 (3%) Strand=Plus/Plus Query 24995 AACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 |||| ||||||||||| ||||| ||| | || || ||| | ||||| |||| ||||| Sbjct 19995407 AACAGATGCAAATATTCGTAAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAA 19995466 Query 25054 CGTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 ||||| || || || || || | ||||||| ||| || ||||| || ||||||| Sbjct 19995467 GCTCTGATACAATTGA--CAATGTAAAGGCAAAAATTCA-AGATAAAGAGGGCATTCCAC 19995523 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 | ||||||||| || |||| ||||| || || ||| | || || | || || | | || Sbjct 19995524 CCGACCAACAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCG 19995583 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||||||||| || || ||||| || || ||||| ||||| || || Sbjct 19995584 ATTACAATATCCAGAAGGAATCTACACTCCATTTGGTGCTTAGACT 19995629 Score = 123 bits (136), Expect = 2e-23 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| | || || ||| |||| || | || ||||| ||| Sbjct 19995640 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATTACCCTTGAGGTGGAAAGTTCT 19995699 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || | || |||| ||| ||||| ||||| || ||||||||| Sbjct 19995700 GATACCATTGA--CAATGTCAAGGCTAAAATTCA-AGACAAGGAAGGTATACCACCTGAC 19995756 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| | |||||||||| || || || | || |||| ||| ||| | | || ||| Sbjct 19995757 CAACAGAGACTTATTTTTGCTGGTAAGCAGCTCGAGGATGGTCGAACTCTCGCTGACTAC 19995816 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| || ||||| || || ||||| || || Sbjct 19995817 AATATTCAGAAGGAATCTACTCTGCATTTGGTTCT 19995851 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || || ||||| ||| | || || | ||||||||| ||| Sbjct 19995868 ATGCAAATTTTTGTGAAAACCTTAACCGGGAAAACAATTACCTTGGAAGTGGAGAGCTCT 19995927 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || |||| || ||| || || || || |||||||| |||||| Sbjct 19995928 GATACAATTGATAATGTGAAAGCTAAGATCCAAGATAAGGAGGGTATTCCACCGGACCAA 19995987 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | |||||||| || || || | ||||||| | ||| ||| ||||| || Sbjct 19995988 CAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTGGCAGATTATAAC 19996047 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| ||||| ||| | ||||||||||| Sbjct 19996048 ATTCAAAAGGAATCAACGTTGCATTTAGTGCT 19996079 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| ||||| ||||| || || |||||||| | || || ||| || Sbjct 4360803 AATGCAAATATTTGTGAAGACCTTGACAGGAAAGACCATCACATTGGAGGTTGAGAGCTC 4360744 Query 25058 TGACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || | || | ||| |||||| ||||| || || || || ||||||| Sbjct 4360743 AGACACCATTGA-TAACGTTAAGGCTAAAATCCAGGACAAGGAGGGTATCCCTCCTGACC 4360685 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || | | ||||| || || || ||||| || |||| || || ||| |||||||| Sbjct 4360684 AGCAAAGACTAATTTTCGCTGGAAAGCAATTGGAGGATGGACGTACACTGGCCGATTACA 4360625 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 | |||||||| || ||||| || || Sbjct 4360624 ACATTCAAAAGGAGTCCACCCTCCA 4360600 Score = 111 bits (122), Expect = 1e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| || || || || | |||||| | ||||| || || Sbjct 19996095 AATGCAGATTTTCGTGAAGACATTAACAGGGAAGACAATCACATTGGAAGTCGAAAGTTC 19996154 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || ||||| | || | ||| |||||||| |||||||| || || | Sbjct 19996155 GGACACCATTGACAATGTGAAGGCGAAGATTCAA-GACAAAGAGGGGATTCCTCCAGATC 19996213 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| | | || ||||| || |||||||| || |||| ||| || ||| ||||||| Sbjct 19996214 AACAGAGACTGATCTTTGCTGGAAAACAATTGGAGGATGGTCGGACATTGGCTGATTACA 19996273 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 |||| || ||||| ||||| || || Sbjct 19996274 ATATCCAGAAAGAGTCCACACTCCA 19996298 >seq1 Length=29149675 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || || ||||||| | || |||||||| || Sbjct 6811892 ATGCAAATCTTCGTTAAGACCCTCACAGGAAAGACCATCACCCTTGAGGTGGAGTCTTCC 6811833 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| |||||| || || |||||||||||||| || || Sbjct 6811832 GACACCATCGACAACGTTAAGGCTAAAATCCAGGATAAGGAAGGGATTCCACCGGATCAG 6811773 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || |||||||| ||| | || |||| || ||| | | || ||||| Sbjct 6811772 CAACGATTGATCTTCGCCGGCAAGCAACTTGAGGATGGCCGAACTCTTGCAGACTACAAC 6811713 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || || |||||||| || || || | || |||||||| Sbjct 6811712 ATCCAGAAAGAATCAACTCTTCACCTTGTCCTAAGGCT 6811675 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| || | ||||| || | ||||| | || |||||||| ||| Sbjct 6811664 ATGCAGATCTTTGTAAAAACCCTTACCGGAAAGACAATCACCCTTGAGGTGGAGTCTTCT 6811605 Query 25059 GACACTATCGA-GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || | | |||| || ||| || || ||||| || || || ||||| Sbjct 6811604 GACACTATTGACAACGTTAAAGC-CAAGATCCAGGATAAGGAAGGAATCCCCCCGGACCA 6811546 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || || || || || ||| | || || | || || | | ||||||||| Sbjct 6811545 GCAACGATTGATCTTCGCTGGAAAGCAACTTGAGGACGGCCGAACCCTTGCCGATTACAA 6811486 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||| || || ||||| || || || | ||||| |||| Sbjct 6811485 TATCCAGAAGGAATCAACTCTCCACCTCGTGCTCCGGCT 6811447 >seq5 Length=28023477 Score = 109 bits (120), Expect = 5e-19 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||| ||||| || || || || || | || ||||| ||||||| ||||||| ||| Sbjct 21959963 AACCATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACTCTCGAAGTCGAGAG 21960022 Query 25055 GTCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 || || || ||||| || || ||| ||| ||| ||||| ||||| || || || Sbjct 21960023 CTCCGATACCATCGA--CAATGTCAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCG 21960080 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 ||||| ||||| | ||||| ||||| || || | || || | || || | | ||| Sbjct 21960081 GACCAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGACGGCCGAACACTAGCCGAC 21960140 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| ||||| || ||||||||||| || | ||||| | || |||||||| Sbjct 21960141 TACAACATTCAGAAGGAATCCACGCTCCACCTTGTGCTCCGTCTCAGAGGAGG 21960193 >seq6 Length=29076228 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || |||| || || ||||||| | || || ||||||||| Sbjct 26768020 ATGCAGATTTTCGTGAAAACCCTGACGGGCAAGACCATCACCCTTGAGGTTGAGTCGTCT 26767961 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| |||||||| || ||||| || |||||| Sbjct 26767960 GACACCATCGACAACGTAAAGGCCAAGATCCAGGACAAAGAGGGCATTCCTCCAGACCAA 26767901 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| |||| || || || || ||| | || |||| || ||| ||| ||| || || Sbjct 26767900 CAGCGTCTTATCTTCGCTGGAAAGCAACTCGAGGATGGCCGTACTTTGGCCGACTATAAC 26767841 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || || || || || Sbjct 26767840 ATCCAGAAGGAGTCTACCCTCCA 26767818 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | |||||||| | ||||| | || || ||||||||| Sbjct 26768248 ATGCAAATCTTCGTTAAAACCCTAACCGGTAAGACAATCACCCTTGAGGTTGAGTCGTCT 26768189 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| | ||| || ||| ||||| ||||| ||||| || || || Sbjct 26768188 GATACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCGGATCAG 26768129 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || || || |||||| | || |||| || || ||| ||| ||||| Sbjct 26768128 CAACGTCTCATCTTCGCTGGAAAACAACTCGAGGATGGCCGTACCTTGGCCGACTACAAC 26768069 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 26768068 ATCCAGAAGGAGTCCACCCTCCA 26768046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326996574850