Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq190 634 7e-177 seq1 187 3e-42 seq3 123 3e-23 seq7 93.3 5e-14 >seq190 Length=155293 Score = 634 bits (702), Expect = 7e-177 Identities = 724/967 (75%), Gaps = 4/967 (0%) Strand=Plus/Minus Query 166081 AACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACC 166140 ||||||||||| |||| |||||||| ||||||| || || | ||| | ||||| Sbjct 1217 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1158 Query 166141 ATCTGT-TTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGA 166199 ||||| || || | || ||| | || || ||||| || ||||| ||||| || ||||| Sbjct 1157 -TCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGA 1099 Query 166200 GCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCCTC 166259 || || | || |||||| | || || ||||| || || ||||||||| || |||| | Sbjct 1098 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCTATTATCCCTAC 1039 Query 166260 CTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAATG 166319 ||| || || ||| | ||||| || || || |||||||| || || |||||||||| Sbjct 1038 CTCTGCAGCTATCGGTTTGCACTTTTACCCAATTTGGGAAGCTGCTTCCGTTGATGAATG 979 Query 166320 GCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCT-ATG 166378 | | || ||||||||||||| |||| | || | |||||| | | || | ||| Sbjct 978 GTTATACAACGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCATG 919 Query 166379 CCTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCG 166438 ||||||||||| || |||||| | || ||| || |||||||||||||||||| | Sbjct 918 T-TACATGGGTCGAGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTG 860 Query 166439 TAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTC 166498 | ||||| || || |||||||||||||| | || || ||| || | || || | |||| Sbjct 859 TTGCATATTCAGCTCCTGTTGCAGCAGCTACTGCTGTTTTCTTGATTTACCCAATTGGTC 800 Query 166499 AAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTG 166558 |||| || ||||||| ||||| || || ||| ||| || ||||||| |||| ||| Sbjct 799 AAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTG 740 Query 166559 TCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTG 166618 | ||||| || |||||||||||||| |||||||| ||||| ||| | |||||||| |||| Sbjct 739 TATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGTGTAGCTGGTG 680 Query 166619 TATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCGTCC 166678 ||||||| || || || ||| || ||||| || | || ||||| | | || Sbjct 679 TATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAAGTTGATCA 620 Query 166679 GTGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGA 166738 | || ||||| |||| ||| ||| || | ||||||| || |||||||| ||||| | Sbjct 619 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAA 560 Query 166739 CCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCT 166798 | || || ||||| |||||||||||||| || || || ||||||||||||| ||| | Sbjct 559 CTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTT 500 Query 166799 TCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGT 166858 ||||||||||||| || | || |||||||| || || |||||||| || |||||||||| Sbjct 499 TCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGT 440 Query 166859 TTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGT 166918 || ||| | ||| ||||||| ||||| |||||| | || |||||||| |||||||| | Sbjct 439 CCACCGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAAT 380 Query 166919 CCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTG 166978 | | | ||| |||| |||||||| | || || ||||| ||| | | ||||||||| Sbjct 379 CTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTA 320 Query 166979 GTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGCTG 167038 ||| ||||||||||| ||||| || ||||||||||||||||||||||| || || |||| Sbjct 319 ATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTG 260 Query 167039 CTGCTGA 167045 ||| ||| Sbjct 259 CTGTTGA 253 Score = 517 bits (572), Expect = 1e-141 Identities = 721/1007 (72%), Gaps = 8/1007 (1%) Strand=Plus/Plus Query 167310 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 167369 ||||||||||| | | ||||| || || ||||| || ||||| || || | || | Sbjct 34873 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 34932 Query 167370 TTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGTTACGAGCT 167429 |||| ||| ||| | || | || || ||| |||| || || || ||||| || | Sbjct 34933 TTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 34992 Query 167430 GGTATACCCACGGGTTGGCGTCTAGTTACC--TTG--AGGGTGCTAATTTTCTCACGGCA 167485 |||||||||| || ||||| |||| | ||| ||| ||| | || | | || || Sbjct 34993 GGTATACCCATGGATTGGCA---AGTTCCTATTTGGAAGGATGCAACTTCT-TAACCGCC 35048 Query 167486 GCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAG 167545 ||||| || ||||||||| | | | | || ||| | | |||| ||||| ||||| Sbjct 35049 GCAGTTTCGACTCCTGCTAATAGTTTAGCCCACTCTTTGTTGTTACTATGGGGCCCTGAA 35108 Query 167546 TCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTC 167605 | || || ||||| | | ||||| || | || || || ||| ||||||| || ||| Sbjct 35109 GCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTC 35168 Query 167606 CACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAGTAGACTAGTA 167665 ||||| || || | || ||||| || ||| | || |||||||| | | || || Sbjct 35169 CACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTT 35228 Query 167666 GGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTT 167725 | || ||||| ||||| || || || || || || |||||||| ||||| ||||| Sbjct 35229 CAATTGCGACCTTATAATGCAATCGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTA 35288 Query 167726 TTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCA 167785 || || || ||||| || || ||||| ||||||||||||| || |||||||| ||| Sbjct 35289 TTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCA 35348 Query 167786 GCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTC 167845 || |||||| ||||| | ||||| | || || || ||||| ||||| | ||||| || Sbjct 35349 GCTATATTTCGATTCATCCTATTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTT 35408 Query 167846 CATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTT 167905 ||||||||||||||||| || | | |||| ||| |||| | || || ||||||| | Sbjct 35409 CATATGATGGGAGTTGCGGGGGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCT 35468 Query 167906 ACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAAGCATTTGAT 167965 || ||||| ||||| | | ||| ||||| || ||||| || ||| || ||| | Sbjct 35469 ACCGTAGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCCGTGCTTTTAAC 35528 Query 167966 ACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATT 168025 | ||||| | || ||||||||||| ||||||||||||||||| || ||||| ||||| Sbjct 35529 CCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATC 35588 Query 168026 TTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTC 168085 ||||| ||||||| |||||| |||||||| || ||||||||| | || || || || Sbjct 35589 TTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTA 35648 Query 168086 ATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTTCGTGCTTAT 168145 | || | |||| ||| || |||| | | ||||| || || || || ||||| ||| Sbjct 35649 ACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTAT 35708 Query 168146 GACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACG 168205 ||||| || ||||||||| | | ||||| || ||||| || ||||| ||||||||||| Sbjct 35709 GACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACC 35768 Query 168206 AAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAACCACAT 168265 ||||| || ||| | || ||||| | ||||| |||||||| | ||| || || ||| Sbjct 35769 AAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCAT 35828 Query 168266 GAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 |||||| || ||||||| || || || | || | || |||||||| Sbjct 35829 GAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 35875 >seq1 Length=29149675 Score = 187 bits (206), Expect = 3e-42 Identities = 168/211 (80%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 166831 GCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTC 166890 || || |||||||| || ||||||||||| || ||| | ||| ||||| | ||||| ||| Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTC 9383886 Query 166891 AACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAAC 166950 ||| | || |||||||| |||||||| || | | ||| |||| |||||||| | || Sbjct 9383887 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 9383946 Query 166951 ACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAAT 167010 || ||||| ||| | | ||||||||| ||| ||||||||||| ||||| || |||||| Sbjct 9383947 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 9384006 Query 167011 GCTCACAACTTCCCTCTGGATCTTGCTGCTG 167041 ||||||||||||||||| || || ||||||| Sbjct 9384007 GCTCACAACTTCCCTCTAGACCTAGCTGCTG 9384037 >seq3 Length=39782674 Score = 123 bits (136), Expect = 3e-23 Identities = 145/193 (75%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 167748 AGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATATTTAGAT---TCCTAC 167804 |||| ||||||||||||| || |||||||| ||||| |||||| ||| |||||| Sbjct 23202867 AGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTAC 23202926 Query 167805 TATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATGATGGGAGTTGCTG 167864 | |||| ||||||| ||||| ||||| | ||||| || ||||||||||||||||| | Sbjct 23202927 TTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGG 23202983 Query 167865 GTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTCTGT 167924 | | | |||| ||| ||||| | || || || |||| ||| ||||| ||||| | Sbjct 23202984 GGGTGTTGGGCGTTGCTTTGCTATGCGCTATTCAGGGTGCTACTGTAGAAAATACCTTAC 23203043 Query 167925 ATGAAGATGGTGA 167937 ||| ||||| || Sbjct 23203044 TTGAGGATGGGGA 23203056 >seq7 Length=19226500 Score = 93.3 bits (102), Expect = 5e-14 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 166948 AACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGT 167007 || || ||||| ||| | | ||||||||| ||| ||||||||||| ||||| || ||| Sbjct 19048888 AATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGT 19048947 Query 167008 AATGCTCACAACTTCCCTCTGGATCTTGCTG 167038 |||||||||||||||||||| || || |||| Sbjct 19048948 AATGCTCACAACTTCCCTCTAGACCTAGCTG 19048978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567230652824000