Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3 233 2e-56 seq7 93.3 5e-14 seq5 89.7 6e-13 seq2 89.7 6e-13 seq1 89.7 6e-13 >seq3 Length=39782674 Score = 233 bits (258), Expect = 2e-56 Identities = 596/895 (67%), Gaps = 19/895 (2%) Strand=Plus/Minus Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862 ||||| |||||||||||| |||| ||||||||||| ||||| |||| ||| || ||| | Sbjct 22913702 TTTTGATATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAAGGAAATCAAC 22913643 Query 92863 TTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAAT 92920 | || | | | |||||| | | || || || ||| ||| | | ||| Sbjct 22913642 TCCATCCAATCAAATGGATTTTGCACATTGTAGATTTTGTCATACCCCAATGC-TCCAAC 22913584 Query 92921 -AATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979 |||||||| || |||||||| ||||| || ||| | || | ||||||||| | || Sbjct 22913583 CAATCTATCTGCCACAAATTCAATGTATTGGCTCATAAGGTCTCCATTCATTCCAACTAG 22913524 Query 92980 ACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGAT 93039 | || || | ||| || | ||| || |||| || || || || | | || Sbjct 22913523 AGCCACCGGCAAAGCATCACAAACGAATTCCCTCTCTATATTCACAGCCTCCATAACAAT 22913464 Query 93040 TTCTATTACTCTA-CTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAA 93098 || | |||| | | | | || || | ||| | |||| || || |||| Sbjct 22913463 CTCCTTCACTCGATCCACATTCAATTTCTTCCTCAACA-ACGAATACAACAAACATGCAA 22913405 Query 93099 AGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTA 93158 | || ||| | |||||| |||| ||| |||||||| || |||||||| || || | Sbjct 22913404 AATCACAATGAAGACCTTCATCTCTTGAAATCAACTCGTTTGAGAATGTTAGTCCAGGCA 22913345 Query 93159 ACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTT 93218 | || ||||| || | ||| || || ||| |||||||| || || || || || | Sbjct 22913344 TTAACCCACGTTTTTTCAACCAGAAAATAGAACAGAAACTACCTGAGAAGAAAATTCCCT 22913285 Query 93219 CCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTG---ATCC 93275 | || |||||||||| ||| || || ||||| || | ||||| |||| Sbjct 22913284 CAACACAAGCAAATGCCAAAATCCGCTCAGCAAAT------GACTCCGTGCTGTCAATCC 22913231 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 | || || ||||||||||| || ||||| | ||| || | || || ||||| | ||| | Sbjct 22913230 ACTTCAACGCCCAATCGGCCTTCTTCTTGACACAGGGGACAGTATCAATAGCATGAAACA 22913171 Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 | || ||| | ||||||| ||||| || |||| | ||| |||||| || | Sbjct 22913170 AGCGATTCTTCTCATTCGAATCTTTGATGTAAGTTTCGAGGAGAAGACTATACATCTCGG 22913111 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455 |||| | ||||| || ||||||||||| |||||||| ||| |||| | || || | Sbjct 22913110 AATGAATGTTCTCGATAGCAATTTGGAAACCGTAGAAGGCTCTGACTTCAGCGACTTGAA 22913051 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 |||| | || | | | || || || ||| |||||||| || || || || | Sbjct 22913050 CTTCCTTCATGAACCGACCGGCAAGGTTCTCCAAGACGATACCATCAGAGGCAGCGAAGA 22912991 Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATC-ATCTTTAAGCTTATCCCAATCGGAT 93574 | || | | || | || ||||| ||||| || ||||| |||||||| || Sbjct 22912990 AGGCAAGGACGTGAGTGATGAAATGCTTCTCGTCGGAAGTTAAG-GAATCCCAAT-GGCG 22912933 Query 93575 AG-ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633 || |||| || |||||||| |||||| | ||||| || || ||||| || || ||||| Sbjct 22912932 AGTGTCTTGAGAGAGATCGACCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCTTCTTGTA 22912873 Query 93634 CATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTA 93688 ||| ||||| || | |||||||||| || || ||| || |||| ||||||| Sbjct 22912872 CATCTCCCAGATTTGGGGATATTGAATGGGGAACATGCAGAAGCGATCAGGGTTA 22912818 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/94 (83%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT-CGGGAGCG 126323 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 7722850 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTACGAGGGCG 7722791 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||| || ||||| |||||| ||| |||| Sbjct 7722790 TGGGTTCAAATCCCACTTCTGACATTTTAATATT 7722757 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/95 (82%), Gaps = 3/95 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 32927397 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 32927338 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATT-ATTAT 126356 |||||||| || ||||| |||||| || ||||| Sbjct 32927337 GTGGGTTCAAATCCCACTTCTGACATTTTAATTAT 32927303 >seq7 Length=19226500 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/85 (85%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||||| | | ||||| Sbjct 17712275 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTGAGAGAGCG 17712334 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| ||||| ||||||| Sbjct 17712335 TGGGTTCGAATCCCACTTCTGACAA 17712359 >seq5 Length=28023477 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/97 (81%), Gaps = 4/97 (4%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 4704293 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 4704234 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGG 126359 |||||||| || ||||| ||||| ||| || |||| Sbjct 4704233 GTGGGTTCAAATCCCACTTCTGAC--ATTCTTTTTGG 4704199 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 3893261 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 3893318 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 3893319 GCGTGGGTTCAAATCCCACTTCTGACA 3893345 >seq2 Length=23174626 Score = 89.7 bits (98), Expect = 6e-13 Identities = 83/104 (80%), Gaps = 6/104 (6%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 17448843 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGGG 17448786 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 ||||||||| || ||||| ||||||| || ||||| ||||| Sbjct 17448785 CGTGGGTTCAAATCCCACTTCTGACAACTTTTTATTAATATTTT 17448742 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 12462357 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 12462416 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 12462417 GTGGGTTCAAATCCCACTTCTGACA 12462441 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/83 (83%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 19640602 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 19640545 Query 126328 TTCGAACCCCACACCTGACAAAT 126350 ||| || |||||| ||| ||||| Sbjct 19640544 TTCAAATCCCACAGCTGTCAAAT 19640522 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 14125369 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 14125426 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| ||| || Sbjct 14125427 TTCAAATCCCACAGCTGTCAAGTT 14125450 >seq1 Length=29149675 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/91 (82%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGC 126322 |||| ||| |||||||||||||||||||||||||||||| | |||||| || | || Sbjct 5274491 ACAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGC 5274548 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTAT 126353 |||||||| || |||||| ||| || ||||| Sbjct 5274549 GTGGGTTCAAATCCCACAGCTGTCATATTAT 5274579 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/95 (82%), Gaps = 4/95 (4%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 23419692 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCGCTAACGAGGGC 23419751 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| || ||||| ||||| ||| ||||| Sbjct 23419752 GTGGGTTCAAATCCCACTTCTGAC--ATTTTTATT 23419784 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 23427008 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 23427067 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 23427068 GTGGGTTCAAATCCCACTTCTGACA 23427092 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/89 (82%), Gaps = 6/89 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 7202902 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 7202959 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||| || ||||| |||||||| Sbjct 7202960 GCGTGGGTTCAAATCCCACTTCTGACAAA 7202988 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 971111 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 971054 Query 126325 GGGTTCGAACCCCACACCTGACAAA 126349 |||||| || |||||| ||| |||| Sbjct 971053 GGGTTCAAATCCCACAGCTGTCAAA 971029 Score = 84.2 bits (92), Expect = 2e-11 Identities = 74/91 (81%), Gaps = 6/91 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 7613114 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 7613057 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||| || ||||| ||||||| || Sbjct 7613056 GCGTGGGTTCAAATCCCACTTCTGACAATTT 7613026 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 16281193 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 16281136 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| ||| || || Sbjct 16281135 TTCAAATCCCACAGCTGTCAATTTTTT 16281109 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/97 (80%), Gaps = 7/97 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 22517327 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGGG 22517384 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA-ATTATTATT 126357 ||||||||| || ||||| ||||||| ||| || || Sbjct 22517385 CGTGGGTTCAAATCCCACTTCTGACAATATTTTTTTT 22517421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556859477455600