Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_008562.1 Length=162109 Score E Sequences producing significant alignments: (Bits) Value seq176 113 5e-20 >seq176 Length=2164 Score = 113 bits (124), Expect = 5e-20 Identities = 214/313 (68%), Gaps = 9/313 (3%) Strand=Plus/Minus Query 41801 GAGAACGATTATTATTACCATTTTCTATCCAGACACTGCCATCCGTCGGTGCGCCATTAT 41860 || ||||||||| |||||| || ||| |||| ||||| | || || || || | Sbjct 1241 GATAACGATTATCGTTACCAGCATC---CCACACACCACCATCAGAAGGCGCACCCTTGT 1185 Query 41861 AATTACCGTGCCAGGTATCGGCGCACCACTCCCAGACGTTCCCGTGCATATCGTAGAGTC 41920 | | ||||||||| || |||||||||||||| || |||||||| ||||| || | | Sbjct 1184 AGCTGTCGTGCCAGGGGTCAGCGCACCACTCCCAAACATTCCCGTGGATATCATACAAGC 1125 Query 41921 CGAAGGCATTAG---GGGGAAATTGTCCCACGGGAGTCGTTTCTTCTCGATATTCTCCCT 41977 | ||||| || | | |||| || || ||||| || || || || || | |||| Sbjct 1124 CAAAGGCGTTGGCTTGTTGAAACTGACCGACGGGGGTAGT---TTGGCGGTAGGCGCCCT 1068 Query 41978 CCGCTTCCCCGGGGTAGGTATAGCTGGCATTGTAGTTAGCCAATTCCCCGGTAATGGTTT 42037 | | | | ||||| |||||| |||| ||||| || | | ||| | ||| | Sbjct 1067 TGGGTCCTGAGCCATAGGTGTAGCTGCCATTATAGTTGGCGAGGTAGGTGGTCAGGGTAT 1008 Query 42038 CCCCAAAGTAAAATGGGGTGGTGGTTCCAGCACGACAGGCGTATTCCCATTCTGCCTCAC 42097 | || | || ||| ||| | || ||||| || || || |||||||| || || |||| Sbjct 1007 CACCGACGTGAAAGGGGCTAGTAGTTCCGGCGCGGGCTGCATATTCCCACTCGGCTTCAC 948 Query 42098 TCGGTAGCCGGTA 42110 |||||| ||||| Sbjct 947 TCGGTAATCGGTA 935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518619568275600