Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3 143 2e-29 seq6 123 2e-23 seq5 122 7e-23 seq1 113 4e-20 >seq3 Length=39782674 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| |||||||| ||||| | || | |||||||| | | | Sbjct 19995868 ATGCAAATTTTTGTGAAAACCTTAACCGGGAAAACAATTACCTTGGAAGTGGAGAGCTCT 19995927 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| || || ||||| ||||||||||||||||| || ||| Sbjct 19995928 GATACAATTGATAATGTGAAAGCTAAGATCCAAGATAAGGAGGGTATTCCACCGGACCAA 19995987 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || || ||| | || ||| | | || | | ||||| ||| Sbjct 19995988 CAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTGGCAGATTATAAC 19996047 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| ||||| || | |||||||| | ||||||||||| || Sbjct 19996048 ATTCAAAAGGAATCAACGTTGCATTTAGTGCTCCGATTGCGCGGTGG 19996094 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 |||||||||| || || |||||| | || || ||||| |||| || || ||||||| | Sbjct 19995410 AGATGCAAATATTCGTAAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCT 19995469 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | ||||| | ||| || | || |||||||||||| || ||||| ||||||||||| | Sbjct 19995470 CTGATACAATTGACAATGTAAAGGCAAAAATTCAAGATAAAGAGGGCATTCCACCCGACC 19995529 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 |||| | ||||| ||||| || || || | ||||| ||| || | ||||||||| Sbjct 19995530 AACAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCGATTACA 19995589 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 | || || || ||||| || | ||||| || | || | ||||| || Sbjct 19995590 ATATCCAGAAGGAATCTACACTCCATTTGGTGCTTAGACTTCGCGGTGG 19995638 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| ||||| || || | || || ||||| | || ||||| ||||||| | Sbjct 19995639 GATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATTACCCTTGAGGTGGAAAGTTC 19995698 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 |||||| | ||| || |||| ||||||||||||||||| ||||| ||||| || || Sbjct 19995699 TGATACCATTGACAATGTCAAGGCTAAAATTCAAGACAAGGAAGGTATACCACCTGACCA 19995758 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | ||||| ||||| || || ||| | |||||| || || || | || ||||| Sbjct 19995759 ACAGAGACTTATTTTTGCTGGTAAGCAGCTCGAGGATGGTCGAACTCTCGCTGACTACAA 19995818 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || ||||| || | ||||| ||| | || | || || ||| Sbjct 19995819 TATTCAGAAGGAATCTACTCTGCATTTGGTTCTTCGTCTTCGTGGGGGT 19995867 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || ||||| || || || |||| | ||||| |||| | Sbjct 19996096 ATGCAGATTTTCGTGAAGACATTAACAGGGAAGACAATCACATTGGAAGTCGAAAGTTCG 19996155 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || ||||||||||| ||||| ||||| || |||||| Sbjct 19996156 GACACCATTGACAATGTGAAGGCGAAGATTCAAGACAAAGAGGGGATTCCTCCAGATCAA 19996215 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| || ||||| || |||||| || || | | |||||||| Sbjct 19996216 CAGAGACTGATCTTTGCTGGAAAACAATTGGAGGATGGTCGGACATTGGCTGATTACAAT 19996275 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 || || ||||| ||||| | || | || | || ||||||| || ||| Sbjct 19996276 ATCCAGAAAGAGTCCACACTCCACCTTGTCCTCCGCCTGCGCGGTGGCTTT 19996326 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || || || || || |||| | || || || | | | Sbjct 4360802 ATGCAAATATTTGTGAAGACCTTGACAGGAAAGACCATCACATTGGAGGTTGAGAGCTCA 4360743 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || ||||| || |||||||||||||| || || || || Sbjct 4360742 GACACCATTGATAACGTTAAGGCTAAAATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 4360683 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || || || || || || |||||| || || | ||||||||||| Sbjct 4360682 CAAAGACTAATTTTCGCTGGAAAGCAATTGGAGGATGGACGTACACTGGCCGATTACAAC 4360623 Query 22399 ATTCAAAAAGAATCCACC 22416 |||||||| || |||||| Sbjct 4360622 ATTCAAAAGGAGTCCACC 4360605 >seq6 Length=29076228 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || || ||||| || || |||| || || || || | | | Sbjct 26767564 ATGCAGATTTTTGTCAAGACGTTGACCGGAAAGACCATCACCCTAGAGGTTGAGAGCTCT 26767505 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || || ||||||||||| ||||| || || ||| Sbjct 26767504 GACACCATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAA 26767445 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| |||||||| || || ||||||| || ||| | ||||||||||| Sbjct 26767444 CAAAGACTTATCTTTGCCGGTAAGCAACTAGAGGACGGTCGTACCCTTGCCGATTACAAC 26767385 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || |||||| | || | || ||||| | || || ||| Sbjct 26767384 ATCCAGAAGGAGTCCACCCTCCACCTTGTGTTGCGTCTTCGTGGTGGT 26767337 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || | || |||||||| |||| || || || ||| || | Sbjct 26767792 ATGCAAATTTTCGTTAAGACCCTGACGGGTAAAACCATCACCCTCGAGGTCGAATCCTCT 26767733 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || ||| || || ||||||||||| ||||| || || ||| Sbjct 26767732 GATACCATCGATAACGTGAAGGCAAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAA 26767673 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || |||||||| || || ||||||| ||| ||| | | ||||| ||| Sbjct 26767672 CAAAGACTCATCTTTGCCGGTAAGCAACTAGAGGACGGCCGTACCCTTGCTGATTATAAC 26767613 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || |||||| | || | || ||||| | || || ||| Sbjct 26767612 ATCCAGAAGGAGTCCACCCTCCACCTTGTGTTGCGTCTTCGTGGTGGT 26767565 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| || | || || || || |||| | || ||||| | | || Sbjct 26767108 ATGCAAATTTTTGTTAAGACCCTGACTGGAAAGACCATCACCTTGGAGGTGGAGAGCTCC 26767049 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| |||||||| |||||||| || || || || || || Sbjct 26767048 GACACGATCGATAATGTGAAAGCTAAAATTCAGGACAAGGAAGGCATCCCTCCGGACCAG 26766989 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || || ||| | || ||| | || || | ||||||||| Sbjct 26766988 CAGAGGTTGATCTTCGCTGGGAAGCAGCTTGAAGATGGGAGGACTCTCGCTGATTACAAC 26766929 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 ||||| || || |||||| | || | || |||| | || || |||||| Sbjct 26766928 ATTCAGAAGGAGTCCACCCTTCACCTTGTCCTGCGTCTCCGTGGTGGTTTT 26766878 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || || ||||| || || |||| || || || || | | | Sbjct 26767336 ATGCAGATTTTTGTCAAGACGTTGACCGGAAAGACCATCACCCTAGAGGTTGAGAGCTCT 26767277 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || |||||||||||||| || ||||| || || Sbjct 26767276 GACACCATTGATAACGTCAAGGCTAAGATCCAAGACAAGGAGGGAATCCCACCAGACCAG 26767217 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || || ||| | || ||| | || | | ||||||||| Sbjct 26767216 CAGAGGTTGATCTTCGCTGGGAAGCAGCTTGAAGATGGAAGGACTCTGGCTGATTACAAC 26767157 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||| || || || ||| | ||||| || Sbjct 26767156 ATTCAGAAGGAGTCAACCTTGCATTTGGT 26767128 >seq5 Length=28023477 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| |||| ||||| || ||||||| ||||| || | | || Sbjct 21959967 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACTCTCGAAGTCGAGAGCTCC 21960026 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| ||| || || |||||||| || || || || || || Sbjct 21960027 GATACCATCGACAATGTCAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCAG 21960086 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || ||||| || ||| | ||||| ||| || | |||| |||||| Sbjct 21960087 CAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGACGGCCGAACACTAGCCGACTACAAC 21960146 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || |||||||| Sbjct 21960147 ATTCAGAAGGAATCCAC 21960163 >seq1 Length=29149675 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||| | ||||| || || |||| || || ||||| || || Sbjct 6811436 ATGCAAATCTTTGTCAAGACTCTTACCGGAAAGACTATCACCCTCGAGGTGGAGTCCTCC 6811377 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| || || || || ||||| |||||||| || || || Sbjct 6811376 GATACCATTGATAACGTCAAGGCCAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCAG 6811317 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || ||||| || ||||| || ||| || || | ||||||||||| Sbjct 6811316 CAAAGACTGATCTTCGCCGGAAAGCAGTTGGAAGATGGACGAACACTTGCCGATTACAAC 6811257 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || |||||||| Sbjct 6811256 ATCCAGAAGGAATCCAC 6811240 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || ||||| | || ||||| | | Sbjct 6810849 ATGCAGATCTTCGTGAAGACCTTGACGGGAAAGACCATCACTTTGGAGGTGGAGAGTTCT 6810790 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || | ||| ||||||||| ||||||||||| |||||||| || || Sbjct 6810789 GATACAATCGACAATGTGAAAGCAAAAATTCAGGACAAGGAGGGAATTCCACCAGACCAG 6810730 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| || ||| | || ||| | ||| | | ||||| ||| Sbjct 6810729 CAGAGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGAAGGACCCTTGCTGATTATAAC 6810670 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || || || ||| Sbjct 6810669 ATTCAGAAGGAGTCGACC 6810652 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||| | ||||| || || | || | || || || | | Sbjct 6811077 ATGCAAATTTTTGTCAAAACTCTCACCGGAAAGACCATTACCTTGGAGGTTGAGTCTTCA 6811018 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || ||||| |||||||| || ||||| || || || Sbjct 6811017 GACACAATTGACAACGTGAAGGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAG 6810958 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| || ||| | |||||| | || | | ||||||||| Sbjct 6810957 CAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAGGATGGAAGGACTCTGGCGGATTACAAC 6810898 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| || |||||| | || | ||| | || || | ||||| Sbjct 6810897 ATTCAAAAGGAGTCCACCCTTCACCTTGTTCTTCGTCTGAGGGGAGG 6810851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727028067350