Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3 131 3e-25 seq6 93.3 9e-14 seq5 87.8 4e-12 seq2 87.8 4e-12 seq4 86.0 1e-11 seq1 84.2 4e-11 >seq3 Length=39782674 Score = 131 bits (144), Expect = 3e-25 Identities = 200/285 (70%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCC 218576 ||||||| | |||||||||| || | || || | |||| | | | |||||||| Sbjct 26362730 TGACTTCGTTAACAAGGAGCTTATATTATTTTCAATGGCTGATTTACAAAGGTCTATTCC 26362789 Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636 |||| |||||||| ||||| || | |||||||| || | |||||| | Sbjct 26362790 GTCAATGGTTGATGGCCTTAAGCCTGGCCAAAGGAAGATCCTTTTCTGTTCTTTCAAGAG 26362849 Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696 |||| | | ||||| ||||| | || ||||| ||||| ||||| || |||| Sbjct 26362850 GAACTTTATCAAAGAAGCAAAGGTTTCACAATTTTCCGGTTACGTATCTGAGCACTCTGC 26362909 Query 218697 CTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGT 218756 || ||||| |||||||||||||| || |||| | || ||||||||||||| ||| Sbjct 26362910 TTATCATCATGGTGAGCAGAGTCTTGCTAGTACCATCATTGGAATGGCACAGGACTTTGT 26362969 Query 218757 GGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGG 218801 |||||||||||||| || | || || || || || |||||||| Sbjct 26362970 TGGCAGTAACAACATTAATCTTCTTCTACCAAATGGACAGTTTGG 26363014 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1729944 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1729885 Query 142563 CCCCAC 142568 |||||| Sbjct 1729884 CCCCAC 1729879 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 8864432 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 8864373 Query 142563 CCCCAC 142568 |||||| Sbjct 8864372 CCCCAC 8864367 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 8865561 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 8865502 Query 142563 CCCCAC 142568 |||||| Sbjct 8865501 CCCCAC 8865496 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 7714900 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7714959 Query 142564 CCCAC 142568 ||||| Sbjct 7714960 CCCAC 7714964 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || |||| |||||||||||| Sbjct 7714361 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGCCGTGGGTTCGAG 7714420 Query 142563 CCCCAC 142568 |||||| Sbjct 7714421 CCCCAC 7714426 >seq6 Length=29076228 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 28574053 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 28574112 Query 142563 CCCCAC 142568 |||||| Sbjct 28574113 CCCCAC 28574118 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1132262 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1132321 Query 142563 CCCCAC 142568 |||||| Sbjct 1132322 CCCCAC 1132327 >seq5 Length=28023477 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 5679770 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5679829 Query 142563 CCCCAC 142568 |||||| Sbjct 5679830 CCCCAC 5679835 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 6161082 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 6161141 Query 142563 CCCCAC 142568 |||||| Sbjct 6161142 CCCCAC 6161147 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 8038916 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 8038857 Query 142563 CCCCAC 142568 |||||| Sbjct 8038856 CCCCAC 8038851 >seq2 Length=23174626 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 16060992 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 16060933 Query 142563 CCCCAC 142568 |||||| Sbjct 16060932 CCCCAC 16060927 >seq4 Length=23425844 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 12799179 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 12799238 Query 142564 CCCAC 142568 ||||| Sbjct 12799239 CCCAC 12799243 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 22914779 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAA 22914720 Query 142563 CCCCAC 142568 |||||| Sbjct 22914719 CCCCAC 22914714 >seq1 Length=29149675 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 || ||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 21852722 AGGCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 21852663 Query 142563 CCCCAC 142568 |||||| Sbjct 21852662 CCCCAC 21852657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834297859790