Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq6 132 4e-26 seq3 118 9e-22 seq2 109 5e-19 seq1 98.7 8e-16 seq5 86.0 5e-12 >seq6 Length=29076228 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | ||||| || || || ||||| || ||| Sbjct 26767791 ATACCACCACGAAGACGGAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTATAGTCG 26767850 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| ||| || ||||| || |||||| |||| |||||||||||||| ||| Sbjct 26767851 GCCAAAGTACGGCCATCCTCGAGTTGCTTTCCAGCGAAGATAAGACGCTGTTGGTCTGGA 26767910 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| |||||||| ||||| |||| | || | |||||| | || || Sbjct 26767911 GGAATGCCCTCTTTGTCCTGGATCTTGGCCTTTACGTTGTCGATGGTGTCAGACGACTCA 26767970 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || ||||| ||||| ||||| || |||||||||||| Sbjct 26767971 ACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTTTTCACGAAAATCTGCATG 26768021 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 114151 AAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAAT 114210 ||| ||| ||||| || | || || | || | || || || || ||||||||||||| Sbjct 26766877 AAAAACCACCACGGAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAAT 26766936 Query 114211 CGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCG 114270 | | ||| | ||||||||| || || |||||| |||| | | ||| ||||||| Sbjct 26766937 CAGCGAGAGTCCTCCCATCTTCAAGCTGCTTCCCAGCGAAGATCAACCTCTGCTGGTCCG 26766996 Query 114271 GAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATT 114330 |||| |||||||| ||||| ||| || ||| | | || | ||||||| | | Sbjct 26766997 GAGGGATGCCTTCCTTGTCCTGAATTTTAGCTTTCACATTATCGATCGTGTCGGAGCTCT 26767056 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || |||| ||| | || || || ||||| || || |||||||| ||||| Sbjct 26767057 CCACCTCCAAGGTGATGGTCTTTCCAGTCAGGGTCTTAACAAAAATTTGCAT 26767108 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | ||| || | || | || || || || || |||||||||||| Sbjct 26767335 ATACCACCACGAAGACGCAACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCG 26767394 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| || || ||||| ||||| || |||| || | |||||||| || Sbjct 26767395 GCAAGGGTACGACCGTCCTCTAGTTGCTTACCGGCAAAGATAAGTCTTTGTTGGTCTGGG 26767454 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||| || | | |||| |||||| | | || Sbjct 26767455 GGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCA 26767514 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || ||||||| || || |||||||||||||| Sbjct 26767515 ACCTCTAGGGTGATGGTCTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 26767564 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | || || || || |||||||||||||| || ||| | ||||||| Sbjct 26767128 ACCAAATGCAAGGTTGACTCCTTCTGAATGTTGTAATCAGCCAGAGTCCTTCCATCTTCA 26767187 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || || |||||| |||| | | ||| ||||| || || || || || ||||| Sbjct 26767188 AGCTGCTTCCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGG 26767247 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| || | | |||| |||||| | | || || || | ||| | || || Sbjct 26767248 ATCTTAGCCTTGACGTTATCAATGGTGTCAGAGCTCTCAACCTCTAGGGTGATGGTCTTT 26767307 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||||| || || |||||||||||||| Sbjct 26767308 CCGGTCAACGTCTTGACAAAAATCTGCAT 26767336 >seq3 Length=39782674 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || ||||| | || ||||| | |||||||| || || || ||||||||| Sbjct 19995641 ATCCCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCG 19995582 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || |||||||| |||||||| |||| || | ||||||||| || Sbjct 19995581 GCAAGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGT 19995522 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| ||||| || ||| ||| |||| | |||| || || | | ||| Sbjct 19995521 GGAATGCCCTCTTTATCTTGAATTTTTGCCTTTACATTGTCAATTGTATCAGAGCTTTCC 19995462 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | |||||||| || ||||||||||| || || ||||| Sbjct 19995461 ACCTCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCAT 19995412 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 |||||||| | ||| ||||| ||||||||||| ||||| || ||| | ||||||| Sbjct 19996076 ACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTGCCAGAGTCCTGCCATCTTCA 19996017 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || |||||||| | || | | |||||||||||| ||||| || || || || Sbjct 19996016 AGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTGGAATACCCTCCTTATCTTGG 19995957 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| ||| | | |||| || || | | || || |||| ||| | ||||| Sbjct 19995956 ATCTTAGCTTTCACATTATCAATTGTATCAGAGCTCTCCACTTCCAAGGTAATTGTTTTC 19995897 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| | ||||| |||||||| ||||| Sbjct 19995896 CCGGTTAAGGTTTTCACAAAAATTTGCAT 19995868 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || || |||||||| || || ||| ||| || | |||||| ||| Sbjct 19996292 GTGGACTCTTTCTGGATATTGTAATCAGCCAATGTCCGACCATCCTCCAATTGTTTTCCA 19996233 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | |||||| || |||||||| || |||||||| |||||| || Sbjct 19996232 GCAAAGATCAGTCTCTGTTGATCTGGAGGAATCCCCTCTTTGTCTTGAATCTTCGCCTTC 19996173 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | |||||| |||| || | || || || || | || Sbjct 19996172 ACATTGTCAATGGTGTCCGAACTTTCGACTTCCAATGTGATTGTCTTCCCTGTTAATGTC 19996113 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 19996112 TTCACGAAAATCTGCAT 19996096 Score = 82.4 bits (90), Expect = 6e-11 Identities = 162/237 (68%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 114147 TTACAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTG 114206 || |||||||| ||||| || | | || | || | || || || |||||||||||| Sbjct 4360567 TTTCAAATACCACCACGAAGACGAAGGACAAGGTGGAGGGTGGACTCCTTTTGAATGTTG 4360626 Query 114207 TAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGG 114266 |||||| || ||||| ||| || | ||| || |||||| | || || | || ||| Sbjct 4360627 TAATCGGCCAGTGTACGTCCATCCTCCAATTGCTTTCCAGCGAAAATTAGTCTTTGCTGG 4360686 Query 114267 TCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGT 114325 || ||||| || || || ||||| || ||| | ||| | | |||| |||||| | Sbjct 4360687 TCAGGAGGGATACCCTCCTTGTCCTGGAT-TTTAGCCTTAACGTTATCAATGGTGTCTGA 4360745 Query 114326 GGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || |||| || | || || || |||| || || ||||| || ||||| Sbjct 4360746 GCTCTCAACCTCCAATGTGATGGTCTTTCCTGTCAAGGTCTTCACAAATATTTGCAT 4360802 >seq2 Length=23174626 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || || || || | ||| | ||||||||| || || |||||||| ||| Sbjct 15735207 ACCACCACGGAGCCTTAAGACAAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGGC 15735266 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || ||| ||| || || || ||||| ||| ||||||||||||| ||||| || || Sbjct 15735267 AAGTGTTCGACCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCAGGCGG 15735326 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || ||||| ||||| ||||||| || | | || | ||| || | ||||| Sbjct 15735327 TATTCCTTCCTTGTCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTCTCGAC 15735386 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || ||||| || ||||| || || |||||||| Sbjct 15735387 CTCGAGAGTTATGGTCTTCCCGGTAAGCGTTTTCACGAAGATCTGCAT 15735434 >seq1 Length=29149675 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || ||||||||||||||||| || ||| | ||| || || || || || Sbjct 6810881 GTGGACTCCTTTTGAATGTTGTAATCCGCCAGAGTCCTTCCATCCTCCAGCTGCTTTCCG 6810940 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| || ||||||||||| ||||| |||||| || Sbjct 6810941 GCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTC 6811000 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | || || || |||| ||| | || || ||||| |||||| Sbjct 6811001 ACGTTGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTAATGGTCTTTCCGGTGAGAGTT 6811060 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||| ||||| Sbjct 6811061 TTGACAAAAATTTGCAT 6811077 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || || ||||||||| | || || || |||||||| || ||| Sbjct 6811468 GTTGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCA 6811527 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | || || |||||||| || || ||||| || || ||||| ||| Sbjct 6811528 GCGAAGATCAATCGTTGCTGGTCCGGGGGGATTCCTTCCTTATCCTGGATCTTGGCTTTA 6811587 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | || || || || | ||| | || || ||||| || ||| Sbjct 6811588 ACGTTGTCAATAGTGTCAGAAGACTCCACCTCAAGGGTGATTGTCTTTCCGGTAAGGGTT 6811647 Query 114366 TTTACAAAAATCTGCATG 114383 |||||||| ||||||||| Sbjct 6811648 TTTACAAAGATCTGCATG 6811665 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | || ||||| || || |||||||||||| Sbjct 6811207 ATACCACCACGGAGACGGAGGACAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCG 6811266 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || |||||| | || || || ||| |||| || | || ||||| || Sbjct 6811267 GCAAGTGTTCGTCCATCTTCCAACTGCTTTCCGGCGAAGATCAGTCTTTGCTGGTCTGGG 6811326 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || ||||| || | | |||| ||| |||| ||| || Sbjct 6811327 GGAATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTATCAATGGTATCGGAGGACTCC 6811386 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || || ||||| ||||| || ||||| || |||||| Sbjct 6811387 ACCTCGAGGGTGATAGTCTTTCCGGTAAGAGTCTTGACAAAGATTTGCATG 6811437 >seq5 Length=28023477 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| ||||| || ||||||||||| ||| | || || || ||||| || || || Sbjct 21960164 CGTGGATTCCTTCTGAATGTTGTAGTCGGCTAGTGTTCGGCCGTCCTCAAGCTGCTTTCC 21960105 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| | || | |||||| ||||||||||| || ||||| ||||| |||||| || Sbjct 21960104 GGCGAAAATCAAACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTTGCCTT 21960045 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | ||| |||| | ||||| || | || | || || || || || || Sbjct 21960044 GACATTGTCGATGGTATCGGAGCTCTCGACTTCGAGAGTGATGGTCTTACCCGTTAGGGT 21959985 Query 114365 TTTTACAAAAATCTGCATGG 114384 ||| || || |||||||||| Sbjct 21959984 TTTCACGAAGATCTGCATGG 21959965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420133427126280