Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 140 6e-28 >seq3 Length=39782674 Score = 140 bits (154), Expect = 6e-28 Identities = 366/556 (66%), Gaps = 7/556 (1%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| | |||| |||||||||||| ||| | || || Sbjct 22912861 ATCTGGGAGATGTACAAGAAGGCCGAAGCCTCCTTCTGGACCGCCGAAGAGGTCGATCTC 22912920 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAAC 42419 | | ||||| | ||||| || | || |||| ||| |||| ||| || Sbjct 22912921 TCTCAAGACACTCGCCATTGGGATTCCTTAACTTCCGACGAGAAGCATTTCATCACTCAC 22912980 Query 42420 ATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTC 42479 | || ||||||||||| |||||||| || || ||| |||||||| ||| ||||| Sbjct 22912981 GTCCTTGCCTTCTTCGCTGCCTCTGATGGTATCGTCTTGGAGAACCTTGCCGGTCGGTTC 22913040 Query 42480 ATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAG 42539 ||||| || || || | ||| | | ||||||||| ||||| || || || ||| Sbjct 22913041 ATGAAGGAAGTTCAAGTCGCTGAAGTCAGAGCCTTCTACGGTTTCCAAATTGCTATCGAG 22913100 Query 42540 AACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAG 42599 ||| | || || ||| |||| || ||| | || |||||| ||| | ||| Sbjct 22913101 AACATTCATTCCGAGATGTATAGTCTTCTCCTCGAAACTTACATCAAAGATTCGAATGAG 22913160 Query 42600 CGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGG 42659 || | |||| | || || || || | ||||| ||||||||||||| || ||| Sbjct 22913161 AAGAATCGCTTGTTTCATGCTATTGATACTGTCCCCTGTGTCAAGAAGAAGGCCGATTGG 22913220 Query 42660 GCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACC 42719 ||| | || ||||| || || | || || || | ||| || | | || ||| | Sbjct 22913221 GCGTTGAAGTGGATTGACAGCACGGAGTCA---TTTGCTGAGCGGATTTTGGCATTTGCT 22913277 Query 42720 GCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAG 42779 || ||||| || |||||||| || ||| || || |||||| | || | || Sbjct 22913278 TGTGTTGAGGGAATTTTCTTCTCAGGTAGTTTCTGTTCTATTTTCTGGTTGAA--AAAAC 22913335 Query 42780 GT--GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 || || ||||| ||||| || ||||| ||||| | || || || || || || | Sbjct 22913336 GTGGGTTAATGCCTGGACTAACATTCTCAAACGAGTTGATTTCAAGAGATGAAGGTCTTC 22913395 Query 42838 ATAGGGACTTTGCCTG 42853 || | || ||||| || Sbjct 22913396 ATTGTGATTTTGCATG 22913411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944336957194400