Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1 154 3e-32 seq6 122 2e-22 seq5 118 3e-21 seq3 118 3e-21 seq2 118 3e-21 seq4 93.3 1e-13 >seq1 Length=29149675 Score = 154 bits (170), Expect = 3e-32 Identities = 173/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || ||||||| ||| ||| || ||||| || || ||||| Sbjct 6811210 CCACCACGGAGACGGAGGACAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCA 6811269 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| ||||| || || ||||| ||||||||||| | || || |||||| Sbjct 6811270 AGTGTTCGTCCATCTTCCAACTGCTTTCCGGCGAAGATCAGTCTTTGCTGG---TCTGGG 6811326 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| ||||||||||| || || || ||||| || || | |||| || || Sbjct 6811327 GGAATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTATCAATGGTATCGGAGGACTCC 6811386 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| ||||| ||||||||||| || || ||||| Sbjct 6811387 ACCTCGAGGGTGATAGTCTTTCCGGTAAGAGTCTTGACAAAGATTTGCAT 6811436 Score = 136 bits (150), Expect = 9e-27 Identities = 170/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | || ||||| || | || ||| || |||||||| || | Sbjct 6811434 CATG-CCACCACGGAGCCGGAGCACGAGGTGGAGAGTTGATTCCTTCTGGATATTGTAAT 6811492 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 |||| || || || ||||| || | ||| ||||| |||||||||| || || || Sbjct 6811493 CGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCCG 6811552 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||||||||| ||||||||||| || ||||| ||||| || |||| || || | Sbjct 6811553 GGGGGATTCCTTCCTTATCCTGGATCTTGGCTTTAACGTTGTCAATAGTGTCAGAAGACT 6811612 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| ||||| ||||| || || || || || |||||||| Sbjct 6811613 CCACCTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTTACAAAGATCTGCAT 6811664 Score = 127 bits (140), Expect = 5e-24 Identities = 168/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || || || || || |||| || |||||| ||||| || |||| Sbjct 6811662 CATG-CCACCACGAAGCCTTAGGACAAGGTGAAGAGTTGATTCTTTCTGGATGTTGTAGT 6811720 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || || || || || || || | ||| || || |||||||||| || || ||| Sbjct 6811721 CTGCAAGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATCAATCGTTGCTGATCCG 6811780 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||| || ||||| |||||||||||||| || || ||||| || || | ||| || | Sbjct 6811781 GTGGAATCCCTTCCTTATCCTGGATTTTAGCCTTAACGTTGTCGATGGTGTCGGAAGACT 6811840 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 6811841 CCACCTCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 6811892 >seq6 Length=29076228 Score = 122 bits (134), Expect = 2e-22 Identities = 144/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| ||||||||||| | || || || || || | ||| ||||| |||||| Sbjct 26767830 TCCTTCTGGATGTTATAGTCGGCCAAAGTACGGCCATCCTCGAGTTGCTTTCCAGCGAAG 26767889 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||||||||| ||| || || || ||||| |||||||| || || || ||| Sbjct 26767890 ATAAGACGCTGTTG---GTCTGGAGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTTACG 26767946 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || ||| || || || || ||||| ||||| || ||||| || || Sbjct 26767947 TTGTCGATGGTGTCAGACGACTCAACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTTTTC 26768006 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 26768007 ACGAAAATCTGCAT 26768020 >seq5 Length=28023477 Score = 118 bits (130), Expect = 3e-21 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || || || | |||| ||| || || || || |||||||| || || || ||||| Sbjct 21960178 AGCACAAGGTGGAGCGTGGATTCCTTCTGAATGTTGTAGTCGGCTAGTGTTCGGCCGTCC 21960119 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || ||||| ||||| |||| |||||| || ||||||||||| || ||| Sbjct 21960118 TCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCC 21960059 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATC 288438 ||||| || || || || || || || | ||| |||| || |||||||| ||||| Sbjct 21960058 TGGATCTTTGCCTTGACATTGTCGATGGTATCGGAGCTC---TCGACTTCGAGAGTGATG 21960002 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || || || ||||| |||||||| Sbjct 21960001 GTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 21959967 >seq3 Length=39782674 Score = 118 bits (130), Expect = 3e-21 Identities = 168/234 (72%), Gaps = 12/234 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || || || || | ||| ||||| |||||||| || || || Sbjct 19996322 CCACCGCGCAGGCGGAGGACAAGGTGGAGTGTGGACTCTTTCTGGATATTGTAATCAGCC 19996263 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 | || || || || || ||||||||||| || |||||||| | |||||| |||| Sbjct 19996262 AATGTCCGACCATCCTCCAATTGTTTTCCAGCAAAGATCAGTCTCTGTTG---ATCTGGA 19996206 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA---T 288420 || || || ||||| || || || ||||| ||||| || || || | || ||| | Sbjct 19996205 GGAATCCCCTCTTTGTCTTGAATCTTCGCCTTCACATTGTCAATGGTGTC---CGAACTT 19996149 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||| | ||||| |||||||| || | ||||| ||||| ||||||||| Sbjct 19996148 TCGACTTCCAATGTGATTGTCTTCCCTGTTAATGTCTTCACGAAAATCTGCATT 19996095 Score = 105 bits (116), Expect = 2e-17 Identities = 180/257 (70%), Gaps = 17/257 (7%) Strand=Plus/Plus Query 288226 GATATGATGA--TTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTT 288283 || ||||||| |||| | | ||||| || || | ||| || || || | ||| | Sbjct 4360556 GAAATGATGAGTTTCAAATA---CCACCACGAAGACGAAGGACAAGGTGGAGGGTGGACT 4360612 Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 | ||||| || || || ||||| || || ||||| || || ||||| ||||| ||||| | Sbjct 4360613 CCTTTTGAATGTTGTAATCGGCCAGTGTACGTCCATCCTCCAATTGCTTTCCAGCGAAAA 4360672 Query 288344 TCAGAC---GCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGT 288400 | || | |||| | || | ||||| || || || ||||||||||| || || |||| Sbjct 4360673 TTAGTCTTTGCTGGTCAGGA---GGGATACCCTCCTTGTCCTGGATTTTAGCCTTAACGT 4360729 Query 288401 TTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCT 288457 | || || | || |||| || || || | ||||| ||||| || |||| |||| Sbjct 4360730 TATCAATGGTGTCTGAGCTC---TCAACCTCCAATGTGATGGTCTTTCCTGTCAAGGTCT 4360786 Query 288458 TGACGAATATCTGCATT 288474 | || ||||| |||||| Sbjct 4360787 TCACAAATATTTGCATT 4360803 >seq2 Length=23174626 Score = 118 bits (130), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| || | || ||||| | ||| ||| || ||||| || |||||||| Sbjct 15735208 CCACCACGGAGCCTTAAGACAAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGGCA 15735267 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || |||||||| |||||||| || | || Sbjct 15735268 AGTGTTCGACCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCAGGCGGT 15735327 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGATTCT 288423 |||||||| || ||||| || || || || || || || || | ||| ||| || Sbjct 15735328 ATTCCTTCCTTGTCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTC---TCG 15735384 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || ||||||||||| || || || ||||| |||||||| Sbjct 15735385 ACCTCGAGAGTTATGGTCTTCCCGGTAAGCGTTTTCACGAAGATCTGCAT 15735434 >seq4 Length=23425844 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| ||||||||||| || ||||| || || || || | |||||| || || ||||| Sbjct 5847871 CCTTCCTTATCCTGGATCTTAGCTTTGACATTGTCGATGGTATCGCTGGACTCAACTTCC 5847812 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||| ||||||||||| || || || || ||||| |||||||| Sbjct 5847811 AACGTAATCGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCAT 5847768 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| ||||||||||| || ||||| || || || || | |||||| || || ||||| Sbjct 5852999 CCTTCCTTATCCTGGATCTTAGCTTTGACATTGTCGATGGTATCGCTGGACTCAACTTCC 5852940 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||| ||||||||||| || || || || ||||| |||||||| Sbjct 5852939 AACGTAATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 5852896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179651528278820