Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq6 120 3e-22 seq3 111 2e-19 seq5 98.7 1e-15 seq1 91.5 2e-13 >seq6 Length=29076228 Score = 120 bits (132), Expect = 3e-22 Identities = 147/197 (75%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||||||||| ||||||| | | || || |||||||| |||||||| Sbjct 26766917 CTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTCCCATCTTCAAGCTGCTTCCCAGCGAA 26766976 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || | | ||||||||| | || | || ||||||||| ||| |||| | ||| | Sbjct 26766977 GATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCC-TGAATTTTAGCTTTCACAT 26767035 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | |||||| |||| ||||| || | |||||||| || || || || |||| Sbjct 26767036 TATCGATCGTGTCGGAGCTC---TCCACCTCCAAGGTGATGGTCTTTCCAGTCAGGGTCT 26767092 Query 42193 TTACAAAGATTTGCATT 42209 | ||||| ||||||||| Sbjct 26767093 TAACAAAAATTTGCATT 26767109 Score = 118 bits (130), Expect = 1e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || | ||| | |||||||||||| || |||||| ||||| |||||||||||| Sbjct 26767110 CCACCCCTGAGACGAAGCACCAAATGCAAGGTTGACTCCTTCTGAATGTTGTAATCAGCC 26767169 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||||| | || || |||||||| |||||||| || | | ||||||||| | ||| Sbjct 26767170 AGAGTCCTTCCATCTTCAAGCTGCTTCCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGG 26767229 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158 | | ||||||||| ||| || |||| | | | ||||| |||| || Sbjct 26767230 ATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTATCAATGGTGTCAGAGCTC---TCA 26767286 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | |||||||| || || || | |||||| ||||| || ||||| Sbjct 26767287 ACCTCTAGGGTGATGGTCTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 26767336 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||||||| | || | ||| |||||| || || || |||||||| || || || | Sbjct 26767577 ACGCAACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCAAGGGTACGGCC 26767636 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| ||||| |||||||| || || ||||||| || ||||| | || | | |||||| Sbjct 26767637 GTCCTCTAGTTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGGGAATTCCCTCCTT 26767696 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| ||| ||| || | | | | || || ||||| || |||| ||||| Sbjct 26767697 GTCCTGGATCTTTGCCTTCACGTTATCGATGGTATCAGAGGATTCGACCTCGAGGGTGAT 26767756 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| ||||| || ||||| || || |||||||| Sbjct 26767757 GGTTTTACCCGTCAGGGTCTTAACGAAAATTTGCAT 26767792 >seq3 Length=39782674 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||||| || ||||| ||||||||||| ||||| ||||| || | || || Sbjct 19995848 ACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCGAGAGTTCGACCATCCTCG 19995789 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||||||||| || || |||| ||| ||||| | ||| | | ||||||| | || Sbjct 19995788 AGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGTATACCTTCCTTGT-CTTG 19995730 Query 42120 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 | |||| | |||| | | | || || |||||| || | || |||||||| Sbjct 19995729 AATTTTAGCCTTGACATTGTCAATGGTATCAGAACTTTCCACCTCAAGGGTAATGGTTTT 19995670 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || ||||| ||||| |||||||| Sbjct 19995669 GCCAGTAAGGGTCTTCACAAATATTTGCAT 19995640 Score = 105 bits (116), Expect = 7e-18 Identities = 154/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||||||| | ||| ||||| || ||||||||||| || || || || |||| || Sbjct 19995621 CACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTC 19995562 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 || ||||||||||| || || || | ||| ||||||| ||| | || ||| || | | | Sbjct 19995561 AAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTAT-CTT 19995503 Query 42119 GATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 42174 || |||||| || | | | | || || ||| |||||| |||| ||||| | Sbjct 19995502 GAATTTTTGCCTTTACATTGTCAATTGTATCAGAGCT---TTCCACCTCGAGGGTGATTG 19995446 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||| || || || ||||| || |||||||| Sbjct 19995445 TTTTGCCAGTGAGAGTTTTTACGAATATTTGCAT 19995412 Score = 93.3 bits (102), Expect = 5e-14 Identities = 139/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||||||||| |||||||| ||||| || || | || || | ||||| |||||||| Sbjct 4360611 CTCCTTTTGAATGTTGTAATCGGCCAGTGTACGTCCATCCTCCAATTGCTTTCCAGCGAA 4360670 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || |||| |||||||| | || | | |||||||||| |||||| || | | Sbjct 4360671 AATTAGTCTTTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATTTTAGCCTTAACGTT 4360730 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| |||| || || || | |||||||| || || || | ||||| Sbjct 4360731 ATCAATGGTGTCTGAGCTC---TCAACCTCCAATGTGATGGTCTTTCCTGTCAAGGTCTT 4360787 Query 42194 TACAAAGATTTGCATT 42209 ||||| ||||||||| Sbjct 4360788 CACAAATATTTGCATT 4360803 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/221 (69%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050 || || | ||| |||||||| || ||||||||||| || ||||| |||||||||| Sbjct 19996085 AATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTGCCAGAGTCCTG 19996026 Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110 | || || |||||||||||||| || || | | ||| ||||| | ||| | | |||| Sbjct 19996025 CCATCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTGGAATACCCTCC 19995966 Query 42111 TTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACC 42167 || || ||| || ||| | | | | || || |||| ||||| || | Sbjct 19995965 TTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCAGAGCTC---TCCACTTCCAAG 19995909 Query 42168 GTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || ||||| || |||| || || ||||| |||||||| Sbjct 19995908 GTAATTGTTTTCCCGGTTAAGGTTTTCACAAAAATTTGCAT 19995868 >seq5 Length=28023477 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||| | ||| | ||| | || | ||| ||||| ||||| ||||| || || Sbjct 21960194 ACCTCCTCTGAGACGGAGCACAAGGTGGAGCGTGGATTCCTTCTGAATGTTGTAGTCGGC 21960135 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || |||| || |||||||| || ||||| || | ||||||||||| | || Sbjct 21960134 TAGTGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGAGG 21960075 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | | ||||||||| ||| ||| |||| | | | || || |||| || Sbjct 21960074 GATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTATCGGAGCTC---TC 21960018 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||| |||||||| || |||||||| || || || ||||| ||||| Sbjct 21960017 GACTTCGAGAGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 21959967 >seq1 Length=29149675 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || ||||||||||| || || || || |||| || || ||||| |||||||| Sbjct 6811474 TCCTTCTGGATATTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCGAAG 6811533 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | ||| |||||||| | || | | ||||| ||| || | || | || | ||| Sbjct 6811534 ATCAATCGTTGCTGGTCCGGGGGGATTCCTTCCTTATCC-TGGATCTTGGCTTTAACGTT 6811592 Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| || ||||| || | ||||| || || || || || || ||||| Sbjct 6811593 GTCAATAGTGTCAGAAGACTCCACCTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTTAC 6811652 Query 42197 AAAGATTTGCAT 42208 |||||| ||||| Sbjct 6811653 AAAGATCTGCAT 6811664 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||||||||| |||||||| |||||||||| | || || |||||||| || || || Sbjct 6810886 CTCCTTTTGAATGTTGTAATCCGCCAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAA 6810945 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | | ||||||||| | || | || ||||||||| ||| | || | | ||| Sbjct 6810946 GATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC-TGAATCTTGGCCTTCACGT 6811004 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || || || || | || ||||| || || || || || || | Sbjct 6811005 TGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTAATGGTCTTTCCGGTGAGAGTTTTGA 6811064 Query 42196 CAAAGATTTGCAT 42208 |||| |||||||| Sbjct 6811065 CAAAAATTTGCAT 6811077 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || |||||||| || || || || | || || | |||||| || ||||| Sbjct 6811246 TCCTTCTGGATGTTGTAATCGGCAAGTGTTCGTCCATCTTCCAACTGCTTTCCGGCGAAG 6811305 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || |||| |||||||| | || | | ||||| ||| ||| || |||| | Sbjct 6811306 ATCAGTCTTTGCTGGTCTGGGGGAATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTA 6811365 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | || ||| || ||||| |||| ||||| || || || || || ||||| ||| Sbjct 6811366 TCAATGGTATCGGAGGACTCCACCTCGAGGGTGATAGTCTTTCCGGTAAGAGTCTTGACA 6811425 Query 42198 AAGATTTGCAT 42208 ||||||||||| Sbjct 6811426 AAGATTTGCAT 6811436 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || || || || ||||| || || ||||| || | || || || ||||| || ||||| Sbjct 6811702 TCTTTCTGGATGTTGTAGTCTGCAAGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAG 6811761 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | ||| ||||| || | ||| | | ||||| ||| |||||| || | ||| Sbjct 6811762 ATCAATCGTTGCTGATCCGGTGGAATCCCTTCCTTATCCTGGATTTTAGCCTTAA-CGTT 6811820 Query 42138 GCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | |||||| || ||||| || | |||||||| || || || || ||||| || Sbjct 6811821 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTAAC 6811880 Query 42197 AAAGATTTGCAT 42208 ||||||||||| Sbjct 6811881 GAAGATTTGCAT 6811892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543211509869600