Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3 149 6e-31 seq5 125 7e-24 seq2 116 4e-21 seq6 109 5e-19 seq1 105 7e-18 >seq3 Length=39782674 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | ||||||||| | ||| | || ||||| || || || |||||||| || Sbjct 19995638 CCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCA 19995579 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||| ||||| ||||| || ||| | || |||| ||| |||||||| ||| Sbjct 19995578 AGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGA 19995519 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || ||||| ||||| |||||| ||||||| || | ||||||| | ||||| Sbjct 19995518 ATGCCCTCTTTATCTTGAATTTTTGCCTTTACATTGTCAATTGTATCAGAGCTTTCCACC 19995459 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | || ||||| || | |||||||||||| |||||||| Sbjct 19995458 TCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCAT 19995412 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || |||||||||| ||||||| ||| | ||| ||||| ||||||||||| |||||||| Sbjct 19996094 CCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTGCC 19996035 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | |||||||||||||| || ||| |||| | || ||| ||||| || ||| Sbjct 19996034 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTGGA 19995975 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| || || ||||| ||| || | ||||||| | ||||| Sbjct 19995974 ATACCCTCCTTATCTTGGATCTTA-GCTTTCACATTATCAATTGTATCAGAGCTCTCCAC 19995916 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | || || ||||| || ||||| || ||||||||||| Sbjct 19995915 TTCCAAGGTAATTGTTTTCCCGGTTAAGGTTTTCACAAAAATTTGCAT 19995868 >seq5 Length=28023477 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | ||| ||||| || ||||||||||| || || | || || |||| Sbjct 21960178 AGCACAAGGTGGAGCGTGGATTCCTTCTGAATGTTGTAGTCGGCTAGTGTTCGGCCGTCC 21960119 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||| ||||| |||| | ||||||||||| ||||| |||||||| || || Sbjct 21960118 TCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCC 21960059 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||| ||| || | ||||| | || ||||| | ||| | |||| Sbjct 21960058 TGGATCTTTGCCTTGACATTGTCGATGGTATCGGAGCTCTCGACTTCGAGAGTGATGGTC 21959999 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | ||||| ||||| || ||||| Sbjct 21959998 TTACCCGTTAGGGTTTTCACGAAGATCTGCAT 21959967 >seq2 Length=23174626 Score = 116 bits (128), Expect = 4e-21 Identities = 155/214 (72%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 64230 TAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGT 64289 |||| || ||||| | ||| ||||| || || |||||||| || || | || || | | Sbjct 15735222 TAAG-ACAAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACCAT 15735280 Query 64290 CTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTT 64349 | || |||||||| ||||| | ||||| ||||||||||| || || |||||||| || | Sbjct 15735281 CCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCAGGCGGTATTCCTTCCTTGT 15735340 Query 64350 CTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 | || || ||| ||| ||| || | |||||| || || || | ||||| || Sbjct 15735341 CCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGG 15735400 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| ||||| | ||||| ||||| || ||||| Sbjct 15735401 TCTTCCCGGTAAGCGTTTTCACGAAGATCTGCAT 15735434 >seq6 Length=29076228 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || || || |||||||||||||| |||| || | | | ||| Sbjct 26766897 AGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTCCCATCT 26766956 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||| || || | || | || ||||||||| ||||| || ||||| || || Sbjct 26766957 TCAAGCTGCTTCCCAGCGAAGATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCC 26767016 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | |||| ||||| ||| || | || || | ||||| || | || | ||| Sbjct 26767017 TG-AATTTTAGCTTTCACATTATCGATCGTGTCGGAGCTCTCCACCTCCAAGGTGATGGT 26767075 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| || |||| || || || |||||||||||| Sbjct 26767076 CTTTCCAGTCAGGGTCTTAACAAAAATTTGCATT 26767109 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| | ||| | || || || || |||||||||||||| || | || | | || Sbjct 26767124 AAGCACCAAATGCAAGGTTGACTCCTTCTGAATGTTGTAATCAGCCAGAGTCCTTCCATC 26767183 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||||||||| || || | || | || ||||||||| || || ||||| || || || Sbjct 26767184 TTCAAGCTGCTTCCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTC 26767243 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||| || || | || ||| | || || |||| || | ||| Sbjct 26767244 TTGGATCTTAGCCTTGACGTTATCAATGGTGTCAGAGCTCTCAACCTCTAGGGTGATGGT 26767303 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| |||||||| || || || ||||| ||||| Sbjct 26767304 CTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 26767336 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| || || | || || || || || ||||| ||||| || | ||| || |||| || Sbjct 26767583 CACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCAAGGGTACGGCCGTCCTC 26767642 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 || ||||| |||||| | ||||| | || ||||| || |||||||| || || || || Sbjct 26767643 TAGTTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGGGAATTCCCTCCTTGTCCTG 26767702 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || ||| ||| || || | |||||| || || || || | || | ||| || Sbjct 26767703 GATCTTTGCCTTCACGTTATCGATGGTATCAGAGGATTCGACCTCGAGGGTGATGGTTTT 26767762 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || |||| || || |||||||||||||| Sbjct 26767763 ACCCGTCAGGGTCTTAACGAAAATTTGCAT 26767792 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| || || | || || || || || ||||||||||| || | ||| || |||| || Sbjct 26767355 CACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCAAGGGTACGACCGTCCTC 26767414 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 || ||||| |||||| | || || | || ||||| || |||||||| || || || || Sbjct 26767415 TAGTTGCTTACCGGCAAAGATAAGTCTTTGTTGGTCTGGGGGAATTCCCTCCTTGTCCTG 26767474 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||| || || | || ||| | || || |||| || | |||||| Sbjct 26767475 GATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCAACCTCTAGGGTGATGGTCTT 26767534 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| || || || ||||| ||||| Sbjct 26767535 TCCGGTCAACGTCTTGACAAAAATCTGCAT 26767564 >seq1 Length=29149675 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || |||| || || || ||||||||||||||||| || | || | | || Sbjct 6810865 AAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAATCCGCCAGAGTCCTTCCATC 6810924 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || |||||||| |||||| | || | || ||||||||| || ||||| ||||| || || Sbjct 6810925 CTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 6810984 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || || | ||| || | || || || | || | ||| Sbjct 6810985 CTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTAATGGT 6811044 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| ||||| | |||||| || ||||||||||| Sbjct 6811045 CTTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 6811077 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || ||||| || || ||||||||||| || | || || | ||| Sbjct 6811225 AGGACAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCAAGTGTTCGTCCATCT 6811284 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | |||||| ||||| | || || | |||||||| || ||||| ||||| || || Sbjct 6811285 TCCAACTGCTTTCCGGCGAAGATCAGTCTTTGCTGGTCTGGGGGAATACCTTCCTTATCC 6811344 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | ||||| || ||||| || | || | ||| Sbjct 6811345 TGGATCTTGGCCTTGACGTTATCAATGGTATCGGAGGACTCCACCTCGAGGGTGATAGTC 6811404 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| | ||| || || || |||||||| Sbjct 6811405 TTTCCGGTAAGAGTCTTGACAAAGATTTGCAT 6811436 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 || || || || |||| || |||||||| || |||||||| ||||| | || || | Sbjct 6811678 CTTAGGACAAGGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCTGCAAGAGTTCGGCCA 6811737 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 || ||||| ||||||||||| | || | || ||||| || || ||||| ||||| || Sbjct 6811738 TCCTCAAGTTGCTTGCCGGCGAAGATCAATCGTTGCTGATCCGGTGGAATCCCTTCCTTA 6811797 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 || || ||||| ||| || || | || || | ||||| || | || | | Sbjct 6811798 TCCTGGATTTTAGCCTTAACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATG 6811857 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || || | || || ||||| |||||||| Sbjct 6811858 GTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 6811892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499643613343600