Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq6 127 2e-24 seq5 96.9 3e-15 seq3 93.3 4e-14 seq1 87.8 2e-12 seq2 84.2 2e-11 >seq6 Length=29076228 Score = 127 bits (140), Expect = 2e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||| |||||| || |||||| ||||||||||| || || | Sbjct 26767827 GACTCCTTCTGGATGTTATAGTCGGCCAAAGTACGGCCATCCTCGAGTTGCTTTCCAGCG 26767886 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||||||||| ||||| || || |||||||| ||| || |||| Sbjct 26767887 AAGATAAGACGCTGTTGGTCTGGAGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTTACG 26767946 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | |||||| ||||| | || | || || || ||||| ||||| Sbjct 26767947 TTGTCGATGGTGTCAGACGACTCAACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTTTTC 26768006 Query 138601 ACAAAAATCTGCATG 138615 || |||||||||||| Sbjct 26768007 ACGAAAATCTGCATG 26768021 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || ||||| |||||||||||||| || | Sbjct 26768055 GACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGGCCATCCTCGAGTTGTTTTCCAGCG 26768114 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| ||||| || || ||||| || || ||||| ||||| ||| || || | Sbjct 26768115 AAGATGAGACGTTGCTGATCCGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACG 26768174 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || || | |||||| ||||| | || | || ||||| || || ||||| Sbjct 26768175 TTGTCGATCGTATCAGACGACTCAACCTCAAGGGTGATTGTCTTACCGGTTAGGGTTTTA 26768234 Query 138601 ACAAAAATCTGCAT 138614 || || || ||||| Sbjct 26768235 ACGAAGATTTGCAT 26768248 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || | || | | | |||||||| || |||||||| ||| Sbjct 26767338 CCACCACGAAGACGCAACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCA 26767397 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||| ||||| ||||||| | |||| || | |||||||| || || Sbjct 26767398 AGGGTACGACCGTCCTCTAGTTGCTTACCGGCAAAGATAAGTCTTTGTTGGTCTGGGGGA 26767457 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||| | ||| ||| Sbjct 26767458 ATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCAACC 26767517 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || |||| || || |||||||||||||| Sbjct 26767518 TCTAGGGTGATGGTCTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 26767564 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| || | || | | | |||||||| ||||||||||| || Sbjct 26766882 CCACCACGGAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCG 26766941 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | | || || || || || || | |||| | | ||| ||||||||||| Sbjct 26766942 AGAGTCCTCCCATCTTCAAGCTGCTTCCCAGCGAAGATCAACCTCTGCTGGTCCGGAGGG 26767001 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| |||| | ||| | | || | ||||||| |||||| Sbjct 26767002 ATGCCTTCCTTGTC-CTGAATTTTAGCTTTCACATTATCGATCGTGTCGGAGCTCTCCAC 26767060 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || |||||||| || || |||||||| ||||| Sbjct 26767061 CTCCAAGGTGATGGTCTTTCCAGTCAGGGTCTTAACAAAAATTTGCAT 26767108 >seq5 Length=28023477 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| ||||||||||||||| | || || |||||| || || || |||| Sbjct 21960160 GATTCCTTCTGAATGTTGTAGTCGGCTAGTGTTCGGCCGTCCTCAAGCTGCTTTCCGGCG 21960101 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || | |||||| ||||||||||| || ||||| ||||| ||| ||| || | | Sbjct 21960100 AAAATCAAACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTTGCCTTGACA 21960041 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||| |||| ||| || |||| || | || ||||| || || ||||| Sbjct 21960040 TTG-TCGATGGTATCGGAGCTCTCGACTTCGAGAGTGATGGTCTTACCCGTTAGGGTTTT 21959982 Query 138600 TACAAAAATCTGCATGG 138616 || || |||||||||| Sbjct 21959981 CACGAAGATCTGCATGG 21959965 >seq3 Length=39782674 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| ||||| | | || ||||| ||||| |||||||| Sbjct 19995866 CCCCCACGAAGACGAAGAACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCG 19995807 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||||| || ||||| | | | || || | ||||||||| || ||| Sbjct 19995806 AGAGTTCGACCATCCTCGAGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGT 19995747 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| |||| | || |||| || | ||| || | |||| Sbjct 19995746 ATACCTTCCTTGTC-TTGAATTTTAGCCTTGACATTG-TCAATGGTATCAGAACTTTCCA 19995689 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | ||||| ||||| || || || ||||| || ||||| Sbjct 19995688 CCTCAAGGGTAATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 19995640 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || || ||||| ||| | || || |||||| ||||| ||||| | | Sbjct 19995605 GATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCA 19995546 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGT-TTTA- 138538 |||| || | ||||||||| || || || || ||||| || ||| |||||| |||| Sbjct 19995545 AAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCT-TGAATTTTTGCCTTTAC 19995487 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||||| | | || || | |||||||||| || | ||||| ||||| ||||||| Sbjct 19995486 ATTGT-CAATTGTATCAGAGCTTTCCACCTCGAGGGTGATTGTTTTGCCAGTGAGAGTTT 19995428 Query 138599 TTACAAAAATCTGCAT 138614 |||| || || ||||| Sbjct 19995427 TTACGAATATTTGCAT 19995412 >seq1 Length=29149675 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | || ||| | ||| | || | | | |||||||||||||||||||| || | Sbjct 6810851 CCTCCCCTCAGACGAAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAATCCGCC 6810910 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | ||||| || || || |||| | |||| | | ||| ||||| || || Sbjct 6810911 AGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 6810970 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| | || | || | ||| || | ||||| | ||||| | Sbjct 6810971 ATGCCTTCCTTGTC-CTGAATCTTGGCCTTCACGTTG-TCAATTGTGTCTGAAGACTCAA 6811028 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || |||||||| |||||||| ||||| Sbjct 6811029 CCTCCAAGGTAATGGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 6811077 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| ||||| || || ||||| ||| | || || |||||| ||||| || || | Sbjct 6811469 TTGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAG 6811528 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| | || || |||||||| || || ||||| || || ||| || | |||| Sbjct 6811529 CGAAGATCAATCGTTGCTGGTCCGGGGGGATTCCTTCCTTATCCTGGATCTTG-GCTTTA 6811587 Query 138539 A--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 | |||| | | ||||| | ||||||||||| | || | || || || || || || Sbjct 6811588 ACGTTGT-CAATAGTGTCAGAAGACTCCACCTCAAGGGTGATTGTCTTTCCGGTAAGGGT 6811646 Query 138597 TTTTACAAAAATCTGCATG 138615 ||||||||| ||||||||| Sbjct 6811647 TTTTACAAAGATCTGCATG 6811665 >seq2 Length=23174626 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || |||||||||||| | || || ||||| || || ||||||| Sbjct 15735241 GATTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACCATCCTCCAGCTGCTTACCGGCG 15735300 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| |||||||| ||||| || ||||| ||||| ||||| ||| | |||| || | Sbjct 15735301 AAGATGAGACGCTGCTGGTCAGGCGGTATTCCTTCCTTGTC-CTGAATCTTTGCCTTGAC 15735359 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||| || | ||| ||||||| || | || || || || || ||||| Sbjct 15735360 ATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTCTTCCCGGTAAGCGTTTT 15735419 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 15735420 CACGAAGATCTGCAT 15735434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261221376800