Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq6 118 8e-22 seq3 109 4e-19 seq1 102 6e-17 seq2 86.0 4e-12 seq5 84.2 2e-11 >seq6 Length=29076228 Score = 118 bits (130), Expect = 8e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || || || ||||||||||| |||| | ||| | ||||| | || Sbjct 26766906 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTCCCATCTTCAAGCTGC 26766965 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | ||||| | ||| ||||| || || ||||||||||| |||||| Sbjct 26766966 TTCCCAGCGAAGATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGAATTTTA 26767025 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || || ||| | || || || ||||| ||||| || || ||| Sbjct 26767026 GCTTTCACATTATCGATCGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTTCCAGTC 26767085 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || |||||||||||||| Sbjct 26767086 AGGGTCTTAACAAAAATTTGCAT 26767108 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| | ||| || || || || ||||||||||| ||| | || | ||||| Sbjct 26767128 ACCAAATGCAAGGTTGACTCCTTCTGAATGTTGTAATCAGCCAGAGTCCTTCCATCTTCA 26767187 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || |||||| | ||||| | ||| ||||| ||| ||||| |||||||| Sbjct 26767188 AGCTGCTTCCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGG 26767247 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || || | || || || || | || || |||| ||| ||||| || Sbjct 26767248 ATCTTAGCCTTGACGTTATCAATGGTGTCAGAGCTCTCAACCTCTAGGGTGATGGTCTTT 26767307 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| || || |||||||| |||||| Sbjct 26767308 CCGGTCAACGTCTTGACAAAAATCTGCATA 26767337 >seq3 Length=39782674 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| ||||||| | |||||||| | || || || ||||| ||||| ||||| Sbjct 19996094 CCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCTGCC 19996035 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | || | ||||| | || || ||||| | ||||| | ||||||||| |||| Sbjct 19996034 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGTGGA 19995975 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || ||||| || || || ||| ||| | || || ||||| | || || Sbjct 19995974 ATACCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCAGAGCTCTCCACT 19995915 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||||||| ||||| || || | ||||| ||||||||||||||| Sbjct 19995914 TCCAAGGTAATTGTTTTCCCGGTTAAGGTTTTCACAAAAATTTGCATA 19995867 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| | || ||||| || ||||| || || || || ||||||||| Sbjct 19995638 CCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCA 19995579 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| |||| || | ||| || ||||| | || | | |||||||||| |||| Sbjct 19995578 AGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGA 19995519 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || || || || |||||| |||||| | || || ||||| |||| || Sbjct 19995518 ATGCCCTCTTTATCTTGAATTTTTGCCTTTACATTGTCAATTGTATCAGAGCTTTCCACC 19995459 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| || ||||| || || ||||||||||| || |||||||| Sbjct 19995458 TCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCAT 19995412 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||| || ||||| || || || || ||||| || |||| ||| | || || Sbjct 19995849 AACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCGAGAGTTCGACCATCCTC 19995790 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || || ||||| | || | | ||||||||| ||| || ||||||||||| Sbjct 19995789 GAGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGTATACCTTCCTTGTCTTG 19995730 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| || ||| | || || ||||| | |||| || || | |||||||||||| Sbjct 19995729 AATTTTAGCCTTGACATTGTCAATGGTATCAGAACTTTCCACCTCAAGGGTAATGGTTTT 19995670 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || ||||| |||||||| Sbjct 19995669 GCCAGTAAGGGTCTTCACAAATATTTGCAT 19995640 >seq1 Length=29149675 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || ||||| ||||||||||| ||| | || | || || | || Sbjct 6810875 TGAAGGGTGGACTCCTTTTGAATGTTGTAATCCGCCAGAGTCCTTCCATCCTCCAGCTGC 6810934 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || || | ||||| | ||| ||||| ||||| ||||||||||| ||| ||| Sbjct 6810935 TTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATCTTG 6810994 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || | || || || || | || || || ||||||||||| || || || Sbjct 6810995 GCCTTCACGTTGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTAATGGTCTTTCCGGTG 6811054 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 |||||||| ||||||||||||||| Sbjct 6811055 AGAGTTTTGACAAAAATTTGCATA 6811078 >seq2 Length=23174626 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||||| || | ||| || ||||| || || || |||||||| ||| Sbjct 15735208 CCACCACGGAGCCTTAAGACAAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGGCA 15735267 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| | || || | || || || ||| | || | |||||| ||||| || Sbjct 15735268 AGTGTTCGACCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCAGGCGGT 15735327 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||||||||||| ||| ||||| || ||| | || || ||||| | | || || Sbjct 15735328 ATTCCTTCCTTGTCCTGAATCTTTGC-CTTGACATTATCGATGGTATCAGAACTCTCGAC 15735386 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || ||||| || || || || ||||| || || || |||||| Sbjct 15735387 CTCGAGAGTTATGGTCTTCCCGGTAAGCGTTTTCACGAAGATCTGCATA 15735435 >seq5 Length=28023477 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || || || || |||||||| ||| || ||| |||| || | || Sbjct 21960169 TGGAGCGTGGATTCCTTCTGAATGTTGTAGTCGGCTAGTGTTCGGCCGTCCTCAAGCTGC 21960110 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092 || || ||| | ||||||||||| ||||| || |||||||||||||| || ||| Sbjct 21960109 TTTCCGGCGAAAATCAAACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTT 21960050 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || || ||| | || || |||||| | || || || | || ||||| ||||| || Sbjct 21960049 GC-CTTGACATTGTCGATGGTATCGGAGCTCTCGACTTCGAGAGTGATGGTCTTACCCGT 21959991 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTTGA 15182 || ||||| || || || ||||| |||| Sbjct 21959990 TAGGGTTTTCACGAAGATCTGCATGGTTGA 21959961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391172414150