Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq6 123 2e-23 seq5 113 4e-20 seq3 113 4e-20 seq1 104 2e-17 >seq6 Length=29076228 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | | || | ||||||||| | || ||||| || ||||| |||||||| | Sbjct 26767109 TCCACCCCTGAGACGAAGCACCAAATGCAAGGTTGACTCCTTCTGAATGTTGTAATCAGC 26767168 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || | ||| || ||||| || |||||| ||||||| | |||||| || || || Sbjct 26767169 CAGAGTCCTTCCATCTTCAAGCTGCTTCCCAGCGAAGATCAACCTCTGCTGGTCTGGTGG 26767228 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||||||||| ||| || ||||| | || | |||||| | ||||| || Sbjct 26767229 GATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTATCAATGGTGTCAGAGCTCTCAAC 26767288 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || ||||||| || || |||||||||||||| Sbjct 26767289 CTCTAGGGTGATGGTCTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 26767336 Score = 113 bits (124), Expect = 4e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || || || ||| ||| || || ||| || || || |||||| Sbjct 26767824 GTAGACTCCTTCTGGATGTTATAGTCGGCCAAAGTACGGCCATCCTCGAGTTGCTTTCCA 26767883 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | ||||| || || ||||| |||||||| |||||| ||| || ||| Sbjct 26767884 GCGAAGATAAGACGCTGTTGGTCTGGAGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTT 26767943 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | ||||| ||| |||||| | ||| || || | ||| | || ||||| ||||| || Sbjct 26767944 ACGTTGT-CGATGGTGTCAGACGACTCAACCTCAAGGGTGATGGTCTTGCCCGTCAGGGT 26768002 Query 127096 TTTTACAAAAATCTGCATG 127114 ||| || |||||||||||| Sbjct 26768003 TTTCACGAAAATCTGCATG 26768021 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||||||| | || | || ||||| || || || ||||||||| | Sbjct 26767338 CCACCACGAAGACGCAACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCA 26767397 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || ||||| || || || || |||| | || || || || || || Sbjct 26767398 AGGGTACGACCGTCCTCTAGTTGCTTACCGGCAAAGATAAGTCTTTGTTGGTCTGGGGGA 26767457 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||||| |||| || | |||||| | ||||| || Sbjct 26767458 ATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTG-TCAATGGTGTCAGAGCTCTCAAC 26767516 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || ||||||| || || |||||||||||||| Sbjct 26767517 CTCTAGGGTGATGGTCTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 26767564 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| ||| || || ||| || || ||||||||| Sbjct 26768052 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGGCCATCCTCGAGTTGTTTTCCA 26768111 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | || |||||||| || || || || ||||||||| ||| || |||| Sbjct 26768112 GCGAAGATGAGACGTTGCTGATCCGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTG 26768171 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| || || | ||| || || | ||| | || || ||||| || || Sbjct 26768172 ACGTTG-TCGATCGTATCAGACGACTCAACCTCAAGGGTGATTGTCTTACCGGTTAGGGT 26768230 Query 127096 TTTTACAAAAATCTGCAT 127113 ||| || || || ||||| Sbjct 26768231 TTTAACGAAGATTTGCAT 26768248 >seq5 Length=28023477 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| || || || ||||| ||||| ||| | | || || || || ||||| ||||| Sbjct 21960164 CGTGGATTCCTTCTGAATGTTGTAGTCGGCTAGTGTTCGGCCGTCCTCAAGCTGCTTTCC 21960105 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 ||| | ||||| |||||||| || ||||| || || ||||||||| ||| || ||| Sbjct 21960104 GGCGAAAATCAAACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTTGCCTT 21960045 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | |||| ||| || | ||||||||||||| || | || || || || || || Sbjct 21960044 GACATTGTCGATGGTATCGGAGCTCTCGACTTCGAGAGTGATGGTCTTACCCGTTAGGGT 21959985 Query 127096 TTTTACAAAAATCTGCATGG 127115 ||| || || |||||||||| Sbjct 21959984 TTTCACGAAGATCTGCATGG 21959965 >seq3 Length=39782674 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || ||||||||||| ||| || ||| ||| || | ||||||||| Sbjct 19996292 GTGGACTCTTTCTGGATATTGTAATCAGCCAATGTCCGACCATCCTCCAATTGTTTTCCA 19996233 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| || ||| ||||| ||||| || ||||| ||||| || ||| ||| Sbjct 19996232 GCAAAGATCAGTCTCTGTTGATCTGGAGGAATCCCCTCTTTGTCTTGAATCTTCGCCTTC 19996173 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||||| ||| |||||||| | || | || || || || | || Sbjct 19996172 ACATTGTCAATGGTGTCCGAACTTTCGACTTCCAATGTGATTGTCTTCCCTGTTAATGTC 19996113 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 19996112 TTCACGAAAATCTGCAT 19996096 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||||||| | ||||| || || || |||||||||||| | Sbjct 19995638 CCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCA 19995579 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || || || || || || ||||| |||| | | ||| || ||||| || Sbjct 19995578 AGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGA 19995519 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||| || || ||| ||| ||| || | | || | || || | || || || Sbjct 19995518 ATGCCCTCTTTATCT-TGAATTTTTGCCTTTACATTGTCAATTGTATCAGAGCTTTCCAC 19995460 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | |||||||| || ||||||||||| || || ||||| Sbjct 19995459 CTCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCAT 19995412 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| |||||||| ||||||||| ||| || || ||| || | || |||||| Sbjct 4360606 GTGGACTCCTTTTGAATGTTGTAATCGGCCAGTGTACGTCCATCCTCCAATTGCTTTCCA 4360665 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | || ||||| || ||||| || |||||||||||| |||||| ||| Sbjct 4360666 GCGAAAATTAGTCTTTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATTTTAGCCTTA 4360725 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||||| || || | || | || || || |||| || Sbjct 4360726 ACGTTATCAATGGTGTCTGAGCTCTCAACCTCCAATGTGATGGTCTTTCCTGTCAAGGTC 4360785 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| || ||||| Sbjct 4360786 TTCACAAATATTTGCAT 4360802 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | ||||| || || ||||||||||| || | | || ||| ||| || Sbjct 19995848 ACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCGAGAGTTCGACCATCCTCG 19995789 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| || ||||| | || | || ||| || || || ||||| || |||||||| Sbjct 19995788 AGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGTATACCTTCCTTGTCTTGA 19995729 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 ||||| ||||| | || | ||| || | ||| || || || | ||| | |||||| Sbjct 19995728 ATTTTAGCCTTGACATTGTCAATGGTATCAGAACTTTCCACCTCAAGGGTAATGGTTTTG 19995669 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || ||||| || ||||| Sbjct 19995668 CCAGTAAGGGTCTTCACAAATATTTGCAT 19995640 >seq1 Length=29149675 Score = 104 bits (114), Expect = 2e-17 Identities = 145/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || || |||||||||||| | | || || || || || || |||||| Sbjct 6811468 GTTGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCA 6811527 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||||||| ||||| || || || || || ||||| ||| ||| || |||| Sbjct 6811528 GCGAAGATCAATCGTTGCTGGTCCGGGGGGATTCCTTCCTTATCCTGGATCTT-GGCTTT 6811586 Query 127037 A--GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 | |||| || | ||||| | | ||| || || | ||| | || || ||||| || | Sbjct 6811587 AACGTTG-TCAATAGTGTCAGAAGACTCCACCTCAAGGGTGATTGTCTTTCCGGTAAGGG 6811645 Query 127095 TTTTTACAAAAATCTGCATG 127114 |||||||||| ||||||||| Sbjct 6811646 TTTTTACAAAGATCTGCATG 6811665 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| || ||||| | | || | ||| || ||||| ||||| Sbjct 6810653 GTCGACTCCTTCTGAATGTTATAATCAGCAAGGGTCCTTCCATCTTCCAGCTGCTTTCCG 6810712 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 || ||||||||| |||||| || || || || |||||||||||| ||| ||| ||| || Sbjct 6810713 GCAAAGATCAATCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCC-TGAATTTTTGCTTT 6810771 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | |||| || || | |||||| || || | || | || || || |||| || Sbjct 6810772 CACATTGTCGATTGTATCAGAACTCTCCACCTCCAAAGTGATGGTCTTTCCCGTCAAGGT 6810831 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 6810832 CTTCACGAAGATCTGCAT 6810849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499670685600