Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1 140 3e-28 seq3 104 2e-17 seq5 98.7 9e-16 >seq1 Length=29149675 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||||| | ||| || || || ||||||||||| |||||||| |||||| Sbjct 6811435 ATGCCACCACGGAGCCGGAGCACGAGGTGGAGAGTTGATTCCTTCTGGATATTGTAATCG 6811494 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| || || | ||| ||||| ||| | |||||||||||||||||||| Sbjct 6811495 GCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCGAAGATCAATCGTTGCTGGTCCGGG 6811554 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| ||||| || | | || | || | || | || | ||||| |||||||| Sbjct 6811555 GGGATTCCTTCCTTATCCTGGA-TCTTGGCTTTAACGTTGTCAATAGTGTCAGAAGACTC 6811613 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || || ||||| || ||||||||||| || ||||| Sbjct 6811614 CACCTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTTACAAAGATCTGCAT 6811664 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || ||||| | || || || || |||||||| || ||||| || || || Sbjct 6811663 ATGCCACCACGAAGCCTTAGGACAAGGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCT 6811722 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | ||| || || ||| | |||||||||||||| ||||| Sbjct 6811723 GCAAGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATCAATCGTTGCTGATCCGGT 6811782 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| ||||| || | |||| | | | || | || | ||||||||||||||| Sbjct 6811783 GGAATCCCTTCCTTATCCTGGA-TTTTAGCCTTAACGTTGTCGATGGTGTCGGAAGACTC 6811841 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || | || || || || || || || || || ||||||||| Sbjct 6811842 CACCTCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCATC 6811893 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | || | | || || || || || || |||||||| || || ||||| Sbjct 6810848 ATTCCTCCCCTCAGACGAAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAATCC 6810907 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| |||| || ||||| || | ||||| | |||||||| || Sbjct 6810908 GCCAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGG 6810967 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| || || ||||| || || | || | || | ||||| |||||||| Sbjct 6810968 GGAATGCCTTCCTTGTCCTGAATCTTGGCCTTCA-CGTTGTCAATTGTGTCTGAAGACTC 6811026 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | |||| || || ||||| |||||||| |||||||||||||| Sbjct 6811027 AACCTCCAAGGTAATGGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 6811077 >seq3 Length=39782674 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| ||||| | | | ||||| ||||| ||||||||||||||| || |||||||| Sbjct 19996097 ATTCCACCGCGCAATCGGAGCACTAAATGCAACGTTGATTCCTTTTGAATGTTATAATCT 19996038 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | || || || || | ||||| | || |||||||| Sbjct 19996037 GCCAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCCGGT 19995978 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || |||||||| || || ||| | || | || || || ||| Sbjct 19995977 GGAATACCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCAGAGCTCTCC 19995918 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | |||| ||||| ||||||| ||||| |||||||||||||| Sbjct 19995917 ACTTCCAAGGTAATTGTTTTCCCGGTTAAGGTTTTCACAAAAATTTGCAT 19995868 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || || | ||| | ||| || || |||||||| |||||||| |||||| Sbjct 19995641 ATCCCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCG 19995582 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | ||| || || || | || | | || ||||| || Sbjct 19995581 GCAAGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGT 19995522 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| |||||||||||||||||| || | || | || || || || Sbjct 19995521 GGAATGCCCTCTTTATCTTGAATTTTTGCCTTTACATTGTCAATTGTATCAGAGCTTTCC 19995462 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | |||||||| || ||||||||||| || ||||||||| Sbjct 19995461 ACCTCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTTACGAATATTTGCATC 19995411 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 |||||| || |||||||| || ||||| || || || ||| | ||| || | || Sbjct 19995843 ATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCGAGAGTTCGACCATCCTCGAGCTG 19995784 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 || || || | || | || || ||||| || || || ||||| || ||||||||||| Sbjct 19995783 CTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGTATACCTTCCTTGTCTTGAATTTT 19995724 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | ||| || ||| || || || || |||| |||||||| || Sbjct 19995723 AGCCTTGACATTGTCAATGGTATCAGAACTTTCCACCTCAAGGGTAATGGTTTTGCCAGT 19995664 Query 45317 TAGAGTTTTTACAAAAATTTGCATC 45341 || || || ||||| ||||||||| Sbjct 19995663 AAGGGTCTTCACAAATATTTGCATC 19995639 >seq5 Length=28023477 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| | ||| | | ||| || || ||||| |||||||| || || || || ||| Sbjct 21960193 CCTCCTCTGAGACGGAGCACAAGGTGGAGCGTGGATTCCTTCTGAATGTTGTAGTCGGCT 21960134 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || || | || ||||| ||| | ||||| || ||||||||||| || Sbjct 21960133 AGTGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGAGGG 21960074 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| || || || || ||| |||| || | ||| ||||| ||||||| Sbjct 21960073 ATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTATCGGAGCTCTCGACT 21960014 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| | || || || ||||| ||||| || || || ||||| Sbjct 21960013 TCGAGAGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 21959967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002126492400