Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq190 710 0.0 seq1 196 6e-45 seq3 136 5e-27 seq7 96.9 4e-15 >seq190 Length=155293 Score = 710 bits (786), Expect = 0.0 Identities = 757/994 (76%), Gaps = 4/994 (0%) Strand=Plus/Plus Query 7529 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATG 7588 ||| ||||||| ||||| ||||||||||||||||||||||| || ||||| |||||||| Sbjct 253 TCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATA 312 Query 7589 CCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCA 7648 |||||| ||||||||| | | || |||||||| || | ||||||||||||| |||| Sbjct 313 CCAAGATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCA 372 Query 7649 ATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGA 7708 | | || |||||||| |||||||| || | |||||| ||||| ||||||| ||| | | Sbjct 373 ACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAA 432 Query 7709 GCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAG 7768 || ||| ||||||| || || || ||||| || || |||||||| || | ||||| ||| Sbjct 433 GCGGTGGACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAG 492 Query 7769 TTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATG 7828 |||||||| ||| ||||||||||||| || ||||| || || |||||||| ||||| Sbjct 493 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATA 552 Query 7829 TTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTG 7888 || || || ||||| ||||||||||| | ||||| | || || ||| || ||| Sbjct 553 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 612 Query 7889 GTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCA 7948 ||||| | | || ||| ||||| | ||||||||||| |||||||| || || || Sbjct 613 GTTTCCCTGATCAACTTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCG 672 Query 7949 CCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCT 8008 || || |||||||| || || | ||||||||| |||||||| |||||||||||||| || Sbjct 673 CCGAATACACCAGCTACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCC 732 Query 8009 TGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAA 8068 ||||| |||| |||| ||||||| ||||||||||| || ||||||||| ||||||| || Sbjct 733 TGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAG 792 Query 8069 GAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAG 8128 |||||||| | || || | | ||| ||||||| ||||| ||||| ||||| || Sbjct 793 CTTCCTTGACCAATTGGGTAAATCAAGAAAACAGCAGTAGCTGCTGCAACAGGAGCTGAA 852 Query 8129 TATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCC 8188 ||||| ||| ||||| ||||||||||| |||||| || |||||||||||| |||||| Sbjct 853 TATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCTCGACCC 912 Query 8189 ATGTATGCAT-AGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTT 8247 ||||| ||| | ||| | | |||||| | | || || | ||||||||||||| Sbjct 913 ATGTA-ACATGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCGTT 971 Query 8248 GTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGC 8307 ||| | ||| ||||||| ||||| |||||||| || || || ||||| | ||| ||||| Sbjct 972 GTATAACCATTCATCAACGGAAGCAGCTTCCCAAATTGGGTAAAAGTGCAAACCGATAGC 1031 Query 8308 GTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGC 8367 ||| | ||| | || ||||||||| || || ||||| || || | || || |||| Sbjct 1032 TGCAGAGGTAGGGATAATAGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGA 1091 Query 8368 GACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA 8427 || |||||||| || || ||||| ||||| ||||||||||| | ||| || | || || Sbjct 1092 AACAGGTTCACGAATACCATCAATATCCACTGGAGGAGCAGCAATGAAGGCAATAATAAA 1151 Query 8428 -ACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACA 8486 ||| | || || | | | ||||| ||||||| ||||| ||||| || | || | Sbjct 1152 TACAGA-AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAA 1210 Query 8487 GACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 |||| || | ||| ||||| |||||||||||| Sbjct 1211 GACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 1244 Score = 529 bits (586), Expect = 2e-145 Identities = 720/1002 (72%), Gaps = 2/1002 (0%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | || | || || ||||| |||| || ||||||||| || ||||| Sbjct 35875 AGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 35816 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| ||||| | |||||| || || || || || ||||||||||| ||| Sbjct 35815 TGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAGAGAATATTTTTGGTATAGAAAGTC 35756 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || || || ||||| |||||||| | ||| || || ||||| |||||||| || | ||| Sbjct 35755 TCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGAGAAACGAAGTCATAGGCACGTAGG 35696 Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502 || || || ||||||| | |||| | |||| | ||| | || || ||||| Sbjct 35695 TTCAGGGCCAGACCAACTACTCCAAGAGCACTCATCCATAAACCAGTTACTGGTACAAAT 35636 Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562 | |||||||||||||| |||||| |||||| || || | |||||||| || ||||| Sbjct 35635 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGACCAA 35576 Query 6563 AAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTG 6622 || || ||||| |||||||| ||||| || || || |||| || || | ||| || | Sbjct 35575 AAGCGGTTAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCACGG 35516 Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682 || ||||||| || ||||| ||||| || ||||| ||||| |||||||| |||||| Sbjct 35515 AATGTATTTGCACCATCCCCATCCTCAAATAAGGTATTTTCTACGGTAGCACCATGAATA 35456 Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742 || || |||| || | || || | || || || |||||||||||||| ||||| | Sbjct 35455 GCGCATAGCAGAGCAGCGCCCAATACCCCCGCAACTCCCATCATATGAAATGGGTTCAAT 35396 Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAAC 6802 ||||| || || || || || | || || | ||| || ||||| ||||| |||||||| Sbjct 35395 GTCCAATTATGAAACCCTTGGAAAAATAGGATGAATCGAAATATAGCTGCTACACCAAAA 35336 Query 6803 GACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAG 6862 |||||||||||||||| ||||| || || ||||| || || || ||||| ||||| Sbjct 35335 CTAGGCGCAAAGAACCAACCAGACTGACCTAGTGGATAAATCAGGAATACAGAAACAAAA 35276 Query 6863 ACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGC 6921 |||||||| || || || || ||||||||||| || || || | | || ||| || || Sbjct 35275 ACAGCAATTGGGCCCGAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACAGATCGAGC 35217 Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981 | ||||| || || | |||||||||||| || | || || |||||||| || ||||| Sbjct 35216 AAGTTCAAATTGACGTAACATGAAACCTATTAGTCCGAAAGCACCGTGGAGAGCAACAAA 35157 Query 6982 AGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCA 7041 || ||| || || || | ||| ||| || |||||||| || ||||| || ||||| Sbjct 35156 AGTCCACAGACCACCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGGCCCCA 35097 Query 7042 TAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAA 7101 ||| | | | || || | | | | ||||||||| || || || || || | ||| Sbjct 35096 TAGTAACAACAAAGAGTGGGCTAAACTATTAGCAGGAGTCGAAACTGCGGCGGTTAAGAA 35037 Query 7102 ATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGT 7161 || ||||| || | ||| ||| || | || || || ||||| || || || || Sbjct 35036 GTTGCATCCTTCCAAATAGGAACTTGCCAATCCATGGGTATACCATGAAGTTACAAAGGT 34977 Query 7162 TGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGA 7221 ||| || || | |||||| || | || | || ||| ||| || || | ||||| || Sbjct 34976 TGTACCTGTAAACCAACCTCCGACGGCAAAATAGGCACAAGGAAAGAGCAATAGACCGGA 34917 Query 7222 CCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATC 7263 |||||| ||||||||||| | || | | | ||||||||| Sbjct 34916 CCAACCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATC 34875 >seq1 Length=29149675 Score = 196 bits (216), Expect = 6e-45 Identities = 170/211 (81%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 7533 CAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAA 7592 ||||||| ||||| ||||||||||||||||||||||| || ||||| |||||||| |||| Sbjct 9384037 CAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAA 9383978 Query 7593 GACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGA 7652 || ||||||||| | | || |||||||| || | ||||||||||||| ||||| | Sbjct 9383977 GATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTA 9383918 Query 7653 TGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAG 7712 || |||||||| |||||||| || | |||||| ||||| | ||||| ||| | ||| | Sbjct 9383917 CAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGGGCTAATACCCAAAGCGG 9383858 Query 7713 TGAACCAGATGCCAACAACTGGCCATGCTGC 7743 |||||||||| || || || ||||| || || Sbjct 9383857 TGAACCAGATACCTACTACAGGCCAAGCAGC 9383827 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 10210 AGTTCATCCTCTTTGTCAATCTCAACCACACAATC-GCTCGTGGGATAAGAAACACAGGT 10268 ||||| | ||||||| | | || ||||||||| || ||||| |||| |||||| Sbjct 10227209 AGTTCTCCTTCTTTGTGTGTGTGAATCACACAATCTGCAGTTGGGAGT-GAAATACAGGT 10227151 Query 10269 CAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTTGATCTAC 10328 | | | ||||| | || || ||||| |||||||| || || |||||| || Sbjct 10227150 TAACAAGTAACCATTTGCCATTTGATCATCGTCAAGGAATGACCCGTCTGATTGATCAAC 10227091 Query 10329 CGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGAGTAGTT 10388 || |||||| | | ||| || ||||| | ||||| ||||| || | ||| || || Sbjct 10227090 CGAACCCGAAACTATTTTCCCAGCACACGTAGAACACGCACCTGCCCTGCAAGAATAAGG 10227031 Query 10389 GAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTACTGATCGTCAG 10438 | ||| || || ||||||||||| ||||| ||||| || ||| |||| Sbjct 10227030 TAAGTCTATTCCCGCTTCTTCAGCTGCATCAAGAATATAAGTATCATCAG 10226981 >seq3 Length=39782674 Score = 136 bits (150), Expect = 5e-27 Identities = 144/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 6638 TCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATAGCACAGAGCAATGCT 6697 || ||||| |||| || ||||| |||||||||||||| |||||||| || ||||| || Sbjct 23203056 TCCCCATCCTCAAGTAAGGTATTTTCTACAGTAGCACCCTGAATAGCGCATAGCAAAGCA 23202997 Query 6698 CCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAG 6757 | || || | || || || |||||||||||||| ||||| | ||||| || || || Sbjct 23202996 ACGCCCAACACCCCCGCAACTCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAAC 23202937 Query 6758 CCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAACGACGGCGCAAAGAAC 6817 || || | | || | ||| || ||||| ||||| |||||||| |||||||||||| Sbjct 23202936 CCTTGGAAAAGTAGGATGAATCGAAATATAGCTGCTACACCAAAACTAGGCGCAAAGAAC 23202877 Query 6818 CAACTGGACT 6827 |||| |||| Sbjct 23202876 CAACCAGACT 23202867 >seq7 Length=19226500 Score = 96.9 bits (106), Expect = 4e-15 Identities = 76/91 (84%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 7536 CAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGAC 7595 |||| ||||| ||||||||||||||||||||||| || ||||| |||||||| |||||| Sbjct 19048978 CAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGAT 19048919 Query 7596 CAGCACGGTTGAGCACGTCTGCCCAGGTGTT 7626 ||||||||| | | || |||||||| || Sbjct 19048918 TAGCACGGTTAATAATATCAGCCCAGGTATT 19048888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622123322453600