Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 1e-15 seq4 91.5 2e-13 >seq3 Length=39782674 Score = 98.7 bits (108), Expect = 1e-15 Identities = 178/260 (68%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 || ||||| || || | || || | || || ||||| || || ||||| | || Sbjct 22913396 TGAAGACCTTCATCTCTTGAAATCAACTCGTTTGAGAATGTTAGTCCAGGCATTAACCCA 22913337 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 || || |||||||||||||| | ||| || || |||||||| || ||||| ||||| Sbjct 22913336 CGTTTTTTCAACCAGAAAATAGAACAGAAACTACCTGAGAAGAAAATTCCCTCAACACAA 22913277 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 127711 || || || || | ||||| ||||| || | | | |||| |||||||| |||| Sbjct 22913276 GCAAATGCCAAAATCCGCTCAGCAAATGA---CTCCGTGCTGTCAATCCACTTCAACGCC 22913220 Query 127712 CACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTT 127771 || | ||||| |||| || ||| ||||| || | || || | ||| | ||||| Sbjct 22913219 CAATCGGCCTTCTTCTTGACACAGGGGACAGTATCAATAGCATGAAACAAGCGATTCTTC 22913160 Query 127772 TCTGATGGATCTTTGATGTA 127791 || | |||||||||||| Sbjct 22913159 TCATTCGAATCTTTGATGTA 22913140 >seq4 Length=23425844 Score = 91.5 bits (100), Expect = 2e-13 Identities = 188/277 (68%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || |||||||| |||||||| || |||||||| ||||| || | || ||||| | Sbjct 22916479 AACCCATCCATTTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCGTCATTACCACCT 22916420 Query 12852 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACAC 12911 | ||| || | | || | || || || ||||| || ||||||||||| ||||| Sbjct 22916419 CCAAGACCTGCCCCTCTCTGTCTCCCCACAGCATCAATCTCATCAATGAAAACAATACAA 22916360 Query 12912 GGTTGATTTTCACG-GGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 12970 || | ||| || ||| || || | |||||||||||| ||||| ||||| || Sbjct 22916359 GGA-GCTTTGGACTTGGCTTTGTCGAATAAGTCTCGCACTCTCGATGCACCCACACCAAC 22916301 Query 12971 AAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGC 13030 ||||| || ||||| | | ||| | ||| || ||| || || | |||||| || Sbjct 22916300 AAACAATTCTACAAACTCTGAGGCAGCACACGAGAAGAATGGCACACCAGCTTCACCAGC 22916241 Query 13031 GATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 13067 | ||| || || || || || || || || || ||| Sbjct 22916240 CACGGCCCGAGCCAGAAGAGTTTTTCCGGTACCCGGT 22916204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613505742920400