Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq5 114 1e-20 seq6 105 8e-18 seq1 100 3e-16 seq2 87.8 2e-12 >seq5 Length=28023477 Score = 114 bits (126), Expect = 1e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | ||| || || | || ||||| || || |||||||||| | Sbjct 21960193 CCTCCTCTGAGACGGAGCACAAGGTGGAGCGTGGATTCCTTCTGAATGTTGTAGTCGGCT 21960134 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || |||| || |||||||| |||||||| ||||| ||||||||||| | || Sbjct 21960133 AGTGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGAGGG 21960074 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | ||||||||| |||||| ||||| | | | || || |||| || Sbjct 21960073 ATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTATCGGAGCTC---TCG 21960017 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | |||||||| || ||||| || ||||| || ||||| ||||| Sbjct 21960016 ACTTCGAGAGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 21959967 >seq6 Length=29076228 Score = 105 bits (116), Expect = 8e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | ||| |||||| ||||| || ||||||| | ||| || | || ||| Sbjct 26767812 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTATAGTCGGCCAAAGTACGGCCATCCTCG 26767871 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| || ||||| || | ||||| ||||| | || | || ||| |||||| | Sbjct 26767872 AGTTGCTTTCCAGCGAAGATAAGACGCTGTTGGTCTGGAGGAATGCCCTCTTTGTCCTGG 26767931 Query 46505 ATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||| | ||| | | | ||||| ||| || || || | |||||||| || Sbjct 26767932 ATCTTGGCCTTTA-CGTTGTCGATGGTGTCAGACGACTCAACCTCAAGGGTGATGGTCTT 26767990 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||||| ||||| || || || ||||| Sbjct 26767991 GCCCGTCAGGGTTTTCACGAAAATCTGCAT 26768020 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| | || || | || ||||| || || || ||||| Sbjct 26768057 CTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGGCCATCCTCGAGTTGTTTTCCAGCGAA 26768116 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || ||||| || | || | | ||||||||| |||||| ||||| ||| Sbjct 26768117 GATGAGACGTTGCTGATCCGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 26768175 Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||| || ||| || || || | ||||| || || || || || ||||||| Sbjct 26768176 TGTCGATCGTATCAGACGACTCAACCTCAAGGGTGATTGTCTTACCGGTTAGGGTTTTAA 26768235 Query 46581 CAAAGATTTGCAT 46593 | ||||||||||| Sbjct 26768236 CGAAGATTTGCAT 26768248 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||| || || | || |||||| ||||| || || || | || || || | Sbjct 26767577 ACGCAACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCAAGGGTACGGCC 26767636 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || || ||||| ||||| || || | | || ||||| | || | | |||||| Sbjct 26767637 GTCCTCTAGTTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGGGAATTCCCTCCTT 26767696 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||| | | | | || || ||||| || || | ||||| Sbjct 26767697 GTCCTGGATCTTTGCCTTCACGTTATCGATGGTATCAGAGGATTCGACCTCGAGGGTGAT 26767756 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| |||||||| || ||||| || |||||||| Sbjct 26767757 GGTTTTACCCGTCAGGGTCTTAACGAAAATTTGCAT 26767792 >seq1 Length=29149675 Score = 100 bits (110), Expect = 3e-16 Identities = 148/206 (72%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || ||||| |||||||| | ||||| || | || || || |||||||||||||| Sbjct 6811702 TCTTTCTGGATGTTGTAGTCTGCAAGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAG 6811761 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| || ||||| || | || | | ||||| ||| ||| || ||| | ||| Sbjct 6811762 ATCAATCGTTGCTGATCCGGTGGAATCCCTTCCTTATCCTGGATTTTAGCCTT-AACGTT 6811820 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| || ||||| || | |||||||| || || || || || ||||| Sbjct 6811821 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTAAC 6811880 Query 46582 AAAGATTTGCAT-TTTGCACAAACAA 46606 ||||||||||| | | || |||||| Sbjct 6811881 GAAGATTTGCATCTATACAGAAACAA 6811906 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||||||||| |||| || || || |||| || || ||||| || ||||| Sbjct 6811474 TCCTTCTGGATATTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCGAAG 6811533 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| || |||||||| | || | | ||||| ||| |||||| ||| | ||| Sbjct 6811534 ATCAATCGTTGCTGGTCCGGGGGGATTCCTTCCTTATCCTGGATCTT-GGCTTTAACGTT 6811592 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || ||||| || | ||||| || || || || || ||||| || Sbjct 6811593 GTCAATAGTGTCAGAAGACTCCACCTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTTAC 6811652 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 6811653 AAAGATCTGCAT 6811664 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||| |||| || || || | || || | |||||| |||||||| Sbjct 6811246 TCCTTCTGGATGTTGTAATCGGCAAGTGTTCGTCCATCTTCCAACTGCTTTCCGGCGAAG 6811305 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| | |||||||| | || | | ||||| ||| |||||| ||||| | Sbjct 6811306 ATCAGTCTTTGCTGGTCTGGGGGAATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTA 6811365 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || ||| || ||||| || | ||||| || || || || || || || ||| Sbjct 6811366 TCAATGGTATCGGAGGACTCCACCTCGAGGGTGATAGTCTTTCCGGTAAGAGTCTTGACA 6811425 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 6811426 AAGATTTGCAT 6811436 >seq2 Length=23174626 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 46382 AACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCG 46441 || || ||||| | ||| ||||| ||||| |||||||||| || || || | || Sbjct 15735223 AAGACAAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACCATCC 15735282 Query 46442 TCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501 || |||||||| |||||||| || | ||||||||||| | ||| | | ||||||||| Sbjct 15735283 TCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCAGGCGGTATTCCTTCCTTGTCC 15735342 Query 46502 ATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATG 46558 ||||| ||||| | | | || || ||| || || || | || ||| Sbjct 15735343 TGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTC---TCGACCTCGAGAGTTATG 15735399 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || |||||||| || ||||| ||||| Sbjct 15735400 GTCTTCCCGGTAAGCGTTTTCACGAAGATCTGCAT 15735434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237057558800