Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3 131 2e-25 seq5 125 7e-24 seq6 118 1e-21 seq2 107 2e-18 seq1 91.5 1e-13 >seq3 Length=39782674 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||||||||||||||| ||||| |||||||| |||||| |||| || || | | Sbjct 19995412 ATGCAAATATTCGTAAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCT 19995471 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || | |||||| | || |||||||| ||||| |||||||| Sbjct 19995472 GATACAATTGACAATGTAAAGGCAAAAATTCAAGATAAAGAGGGCATTCCACCCGACCAA 19995531 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || || || || || || |||| || || || ||| ||||| Sbjct 19995532 CAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCGATTACAAT 19995591 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||| |||||| | || || ||||||||||| Sbjct 19995592 ATCCAGAAGGAATCTACACTCCATTTGGTGCT 19995623 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||||||||| || || || || || ||||||||||| ||| | || || || | Sbjct 19995640 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATTACCCTTGAGGTGGAAAGTTCT 19995699 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | ||||| | ||||| || || || || | |||||| Sbjct 19995700 GATACCATTGACAATGTCAAGGCTAAAATTCAAGACAAGGAAGGTATACCACCTGACCAA 19995759 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | || |||| || || || ||||| || || | || || ||| |||||||| Sbjct 19995760 CAGAGACTTATTTTTGCTGGTAAGCAGCTCGAGGATGGTCGAACTCTCGCTGACTACAAT 19995819 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || |||||| | || ||||||||||| || ||| Sbjct 19995820 ATTCAGAAGGAATCTACTCTGCATTTGGTTCTTCGT 19995855 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||||||||| || || || | || || || |||||||| | || || ||| | | Sbjct 4360802 ATGCAAATATTTGTGAAGACCTTGACAGGAAAGACCATCACATTGGAGGTTGAGAGCTCA 4360743 Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| |||| | ||||||| ||||| ||||| || || | ||||| Sbjct 4360742 GACACCATTGATAACG-TTAAGGCTAAAATCCAGGACAAGGAGGGTATCCCTCCTGACCA 4360684 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | || |||| ||| || || || |||| || | || || || ||| ||||| Sbjct 4360683 GCAAAGACTAATTTTCGCTGGAAAGCAATTGGAGGATGGACGTACACTGGCCGATTACAA 4360624 Query 38423 CATCCAAAAGGA 38434 ||| |||||||| Sbjct 4360623 CATTCAAAAGGA 4360612 >seq5 Length=28023477 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || ||||| || |||||||| |||| |||||| | || Sbjct 21959967 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACTCTCGAAGTCGAGAGCTCC 21960026 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | ||| |||| ||||| || ||||| || | ||||| Sbjct 21960027 GATACCATCGACAATGTCAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCAG 21960086 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| || || ||||| || |||| || || || |||||||||| Sbjct 21960087 CAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGACGGCCGAACACTAGCCGACTACAAC 21960146 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || |||||| | ||||| || | ||||| ||| | ||||| || Sbjct 21960147 ATTCAGAAGGAATCCACGCTCCACCTTGTGCTCCGTCTCAGAGGAGG 21960193 >seq6 Length=29076228 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || ||||| |||||||||||| |||| ||||| || | Sbjct 26767792 ATGCAAATTTTCGTTAAGACCCTGACGGGTAAAACCATCACCCTCGAGGTCGAATCCTCT 26767733 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | ||| |||| ||||| |||||||||||| | ||||| Sbjct 26767732 GATACCATCGATAACG-TGAAGGCAAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCA 26767674 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | ||||| | || || || || || || |||| || ||||| || || || Sbjct 26767673 ACAAAGACTCATCTTTGCCGGTAAGCAACTAGAGGACGGCCGTACCCTTGCTGATTATAA 26767614 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || || || | ||| ||||| Sbjct 26767613 CATCCAGAAGGAGTCCACCCTCCACCTTGTGTTGCGT 26767577 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || |||||||| ||||||||| | || || ||| | | Sbjct 26768020 ATGCAGATTTTCGTGAAAACCCTGACGGGCAAGACCATCACCCTTGAGGTTGAGTCGTCT 26767961 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||||||||| ||||| | ||||| Sbjct 26767960 GACACCATCGACAACG-TAAAGGCCAAGATCCAGGACAAAGAGGGCATTCCTCCAGACCA 26767902 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || || | ||| || || || || || || | || || | |||||| || Sbjct 26767901 ACAGCGTCTTATCTTCGCTGGAAAGCAACTCGAGGATGGCCGTACTTTGGCCGACTATAA 26767842 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || || || |||| || ||| Sbjct 26767841 CATCCAGAAGGAGTCTACCCTCCACCTGGTCCTCCGT 26767805 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||| | || || || ||||||||| | || || ||| | | Sbjct 26767564 ATGCAGATTTTTGTCAAGACGTTGACCGGAAAGACCATCACCCTAGAGGTTGAGAGCTCT 26767505 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| |||||||||||| | ||||| Sbjct 26767504 GACACCATTGACAACG-TCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCA 26767446 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | || || | || || || || || || |||| || ||||| ||| ||||| Sbjct 26767445 ACAAAGACTTATCTTTGCCGGTAAGCAACTAGAGGACGGTCGTACCCTTGCCGATTACAA 26767386 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || || || | ||| ||||| Sbjct 26767385 CATCCAGAAGGAGTCCACCCTCCACCTTGTGTTGCGT 26767349 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| || || || || || |||||| | || || ||| | | Sbjct 26768248 ATGCAAATCTTCGTTAAAACCCTAACCGGTAAGACAATCACCCTTGAGGTTGAGTCGTCT 26768189 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| | || | || |||| ||||| || ||||||||| | || || Sbjct 26768188 GATACGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCGGATCA 26768130 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | ||| || ||||| || || || | || ||| | ||||||||| Sbjct 26768129 GCAACGTCTCATCTTCGCTGGAAAACAACTCGAGGATGGCCGTACCTTGGCCGACTACAA 26768070 Query 38423 CATCCAAAAGGA 38434 |||||| ||||| Sbjct 26768069 CATCCAGAAGGA 26768058 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||| | || || || ||||||||| | || || ||| | | Sbjct 26767336 ATGCAGATTTTTGTCAAGACGTTGACCGGAAAGACCATCACCCTAGAGGTTGAGAGCTCT 26767277 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| |||||||| || | ||||| Sbjct 26767276 GACACCATTGATAACG-TCAAGGCTAAGATCCAAGACAAGGAGGGAATCCCACCAGACCA 26767218 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| || || ||||| || || | | || || || ||||| Sbjct 26767217 GCAGAGGTTGATCTTCGCTGGGAAGCAGCTTGAAGATGGAAGGACTCTGGCTGATTACAA 26767158 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| | || ||||||||||||| ||| | || || || Sbjct 26767157 CATTCAGAAGGAGTCAACCTTGCATTTGGTGCTTCGTCTCAGGGGTGG 26767110 >seq2 Length=23174626 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| |||||||| || || || ||||| || |||| |||||| | Sbjct 15735434 ATGCAGATCTTCGTGAAAACGCTTACCGGGAAGACCATAACTCTCGAGGTCGAGAGTTCT 15735375 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | ||| || | ||||| || ||||| || | ||||| Sbjct 15735374 GATACCATCGATAATGTCAAGGCAAAGATTCAGGACAAGGAAGGAATACCGCCTGACCAG 15735315 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| || || |||||||| || | || || || |||||||||| Sbjct 15735314 CAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAGGATGGTCGAACACTTGCCGACTACAAC 15735255 Query 38424 ATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| |||||| | ||||| ||| Sbjct 15735254 ATCCAGAAGGAATCTACGCTCCAT 15735231 >seq1 Length=29149675 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || || || || |||||| |||| || ||| || || Sbjct 6811436 ATGCAAATCTTTGTCAAGACTCTTACCGGAAAGACTATCACCCTCGAGGTGGAGTCCTCC 6811377 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | || |||| || || || || |||||| | ||||| Sbjct 6811376 GATACCATTGATAACG-TCAAGGCCAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCA 6811318 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | || || | ||| || || ||| |||| || | || || || ||| ||||| Sbjct 6811317 GCAAAGACTGATCTTCGCCGGAAAGCAGTTGGAAGATGGACGAACACTTGCCGATTACAA 6811258 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| |||||| | || || ||| | || || ||| Sbjct 6811257 CATCCAGAAGGAATCCACTCTTCATCTTGTCCTCCGT 6811221 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || ||||||||| | || || ||| | || Sbjct 6811892 ATGCAAATCTTCGTTAAGACCCTCACAGGAAAGACCATCACCCTTGAGGTGGAGTCTTCC 6811833 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| |||| | ||||||| || || || || ||||| | || || Sbjct 6811832 GACACCATCGACAACG-TTAAGGCTAAAATCCAGGATAAGGAAGGGATTCCACCGGATCA 6811774 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | ||| ||||| || || || || | || || || |||||||| Sbjct 6811773 GCAACGATTGATCTTCGCCGGCAAGCAACTTGAGGATGGCCGAACTCTTGCAGACTACAA 6811714 Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446 |||||| || ||| | || || || Sbjct 6811713 CATCCAGAAAGAATCAACTCTTCA 6811690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171612089600