Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq7 134 2e-26 seq3 113 6e-20 >seq7 Length=19226500 Score = 134 bits (148), Expect = 2e-26 Identities = 315/466 (68%), Gaps = 22/466 (5%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 ||||| || || | | || ||||| || || |||| ||| || |||||| | | | Sbjct 3120278 TCAAGAATGTCTGCCCTGTTTGTTGCAGCAATTACAATAATCCCAGTGTTTCCCT--CGA 3120335 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 | |||||||| || |||| ||||||||||| |||||||| ||||| |||||| | Sbjct 3120336 ACCCATCCATTTCAGTCAGAAGCTGGTTAAGTGTTTGTTCTCGTTCGTCATTCCC----- 3120390 Query 16036 TACCACCA---GCACTG---CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGA 16089 ||||||| || || | ||| ||| || |||||||| ||||||| || || | Sbjct 3120391 -ACCACCAATTCCAGTGCCTCTTTGTCGTCCAACAGCATCAATTTCATCAACAAACACAA 3120449 Query 16090 TGCATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCAC 16147 |||| ||| |||||| | | | |||| |||||||| || || | || || | Sbjct 3120450 TGCAAGGTGCATTTTC-CTTG-GCCTTCTTGAAGAGATCACGAACTCTAGAAGCACCAAT 3120507 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATT 16206 ||||||||||||||| ||||| | | | | | || | || || |||||| | || Sbjct 3120508 ACCAACAAACATCTCAACAAACTCAGAACCTG-ATATAGAGAAAAATGGGACACCTGCTT 3120566 Query 16207 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGG 16266 |||| |||||||| ||| || | |||||| || || || || ||| | ||||| Sbjct 3120567 CACCAGCAATGGCCTTGGCTAGCAAAGTCTTCCCGGTTCCAGGAGGACCAACAAGGAGAA 3120626 Query 16267 CACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCA 16326 ||||| ||||| || ||| || | | ||||| || | ||||||||| |||| Sbjct 3120627 CACCTTTAGGAATGCGAGCTCCAACAGCAGTGAACCTCTCGGGCTTCTTAAGAAACTCCA 3120686 Query 16327 CAATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 | | ||| || || | |||||| | || | || ||||||| Sbjct 3120687 CCACCTCCATGAAATCCTGTTTGGCTTCATCTACTCCAGCAACATC 3120732 >seq3 Length=39782674 Score = 113 bits (124), Expect = 6e-20 Identities = 363/551 (66%), Gaps = 17/551 (3%) Strand=Plus/Plus Query 102077 TGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGA 102136 ||||||||| | | ||| | || || | || || || ||| | | ||||| || || Sbjct 22913157 TGAGAAGAATCGCTTGTTTCATGCTATTGATACTGTCCCCTGTGTCAAGAAGAAGGCCGA 22913216 Query 102137 TTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATT 102196 |||||| |||||||| |||| | | | | || ||||||||||| | || ||||| Sbjct 22913217 TTGGGCGTTGAAGTGGATTGACAGCACGGAG---TCATTTGCTGAGCGGATTTTGGCATT 22913273 Query 102197 TGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAA 102256 ||| ||||||||||| || |||||||| ||| ||||| |||||| ||| | || || Sbjct 22913274 TGCTTGTGTTGAGGGAATTTTCTTCTCAGGTAGTTTCTGTTCTATTTTCTGGTTGAAAAA 22913333 Query 102257 GCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACT 102316 || || | ||||| || || ||||| |||||| | || || | || || || || Sbjct 22913334 ACGTGGGTTAATGCCTGGACTAACATTCTCAAACGAGTTGATTTCAAGAGATGAAGGTCT 22913393 Query 102317 CCACCAAGAGTTTGC--GGTGGAACTTTTCAAATTATTGCGTATTAAA-CCAACGACTGA 102373 || || ||||| | | | | ||| || ||| | | ||| || | || Sbjct 22913394 TCATTGTGATTTTGCATGTTTGTTGTATTC--GTTGTTGAGGAAGAAATTGAATG--TGG 22913449 Query 102374 GACTA-TTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAGGGATTCATATTGGATG 102432 | | | | ||||||| ||| || || | || |||| || |||| | | |||| Sbjct 22913450 ATCGAGTGAAGGAGATTGTTATGGAGGCTGTGAATATAGAGAGGGAATTCGTTTGTGATG 22913509 Query 102433 CCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAGATGTCCGAATATATTGAGTATG 102492 | | || ||||| | || |||||| || ||| | |||| ||||| | || Sbjct 22913510 CTTTGCCGGTGGCTCTAGTTGGAATGAATGGAGACCTTATGAGCCAATACATTGAATTTG 22913569 Query 102493 TATCTGATAGATT-GTTGAAGCAGATCGGGGTGCCTC-CAATTTGGAA-CTCCAAGAATC 102549 | | |||||||| |||| ||| || ||||| | ||| | || | ||| |||| Sbjct 22913570 TGGCAGATAGATTGGTTGGAGC--ATTGGGGTATGACAAAATCTACAATGTGCAA-AATC 22913626 Query 102550 CATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAAAAGAGGG 102609 ||||||| | |||||| ||| | | | |||||||| || ||||| || || || | Sbjct 22913627 CATTTGATTGGATGGAGTTGATTTCCTTGCAAGGGAAGACTAATTTCTTTGAGAAAAGAG 22913686 Query 102610 TTGGGGACTAT 102620 ||||||| ||| Sbjct 22913687 TTGGGGAATAT 22913697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620740925736800