Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4 102 1e-16 seq3 93.3 5e-14 seq6 84.2 3e-11 >seq4 Length=23425844 Score = 102 bits (112), Expect = 1e-16 Identities = 201/293 (69%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 11593 AAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGC 11652 || || |||||||| || | ||||| ||||| || || || | ||| || || | | Sbjct 22916479 AACCCATCCATTTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCGTCATT--ACCAC 22916422 Query 11653 ATACCA--CCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATAC 11710 | | | |||||| | || | || ||||| ||||||||||| ||||| || |||| Sbjct 22916421 CTCCAAGACCTGCCCCTCTCTGTCTCCCCACAGCATCAATCTCATCAATGAAAACAATAC 22916362 Query 11711 ACGGTTGGTTGGCACGTGCCTGT-TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCT 11769 | || | || | || || || | ||||| | || || || | | || || ||||| Sbjct 22916361 AAGG-AGCTTTGGACTTGGCTTTGTCGAATAAGTCTCGCACTCTCGATGCACCCACACCA 22916303 Query 11770 ACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCA 11829 || |||| || || || | || ||||| |||| | ||| || ||| || |||||| Sbjct 22916302 ACAAACAATTCTACAAACTCTGAGGCAGCACACGAGAAGAATGGCACACCAGCTTCACCA 22916243 Query 11830 GCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAG 11882 || | ||| ||||| || ||||| || || ||||| |||| ||| | ||||| Sbjct 22916242 GCCACGGCCCGAGCCAGAAGAGTTTTTCCGGTACCCGGTGGTCCAACAAGAAG 22916190 >seq3 Length=39782674 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555 ||||| || |||||| |||||||| | || || | ||| || ||| |||||| Sbjct 22913408 GCAAAATCACAATGAAGACCTTCATCTCTTGAAATCAACTCGTTTGAGAATGTTAGTCCA 22913349 Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATG 119615 ||||| | || | ||| || | ||| || || | ||| ||||| || || ||||| || Sbjct 22913348 GGCATTAACCCACGTTTTTTCAACCAGAAAATAGAACAGAAACTACCTGAGAAGAAAATT 22913289 Query 119616 CCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCAC 119675 ||||| ||||| || || || || | ||||||||||| | | |||| | |||| Sbjct 22913288 CCCTCAACACAAGCAAATGCCAAAATCCGCTCAGCAAATGACTCCGTGCTGTCAATCCAC 22913229 Query 119676 TTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGT 119716 || | ||||| | |||||| || | ||||||||||| Sbjct 22913228 TTCAACGCCCAATCGGCCTTCTTCTTGACACAGGGGACAGT 22913188 >seq6 Length=29076228 Score = 84.2 bits (92), Expect = 3e-11 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 110775 AACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACC 110834 |||||| || || || ||||||| |||| |||||||| | ||| |||| ||| || Sbjct 22590400 AACATATCGAGCAGTATCATTGAATACCCGCAGCATAGGCAAAATACCATTAGATGTCCC 22590341 Query 110835 ATTTGTACCCCTAAT-TCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATAC 110893 |||||| || | ||| | || || ||||||||| | |||||| | |||||||| Sbjct 22590340 ATTTGTTCCACGAATATAACTACCCAT-GGCACGAATATTGTGGATGGAAACACCAATAC 22590282 Query 110894 CACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAAT 110951 |||| ||| |||| || || ||||||||| | | ||| |||| || || || || Sbjct 22590281 CACCAGCCGACTTGCTGATAACAGCACACTCTTTTAAGGTATCATATATTCCTTCTAT 22590224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588974601182000