Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq7 132 6e-26 seq4 116 4e-21 seq6 84.2 3e-11 seq2 84.2 3e-11 >seq7 Length=19226500 Score = 132 bits (146), Expect = 6e-26 Identities = 311/464 (67%), Gaps = 18/464 (4%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9282 ||||| || || | | || || || || || |||| ||| || |||||| | | | Sbjct 3120278 TCAAGAATGTCTGCCCTGTTTGTTGCAGCAATTACAATAATCCCAGTGTTTCCCT--CGA 3120335 Query 9283 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9342 | |||||||| || |||| ||| ||||||| |||||||| ||||| |||||| | Sbjct 3120336 ACCCATCCATTTCAGTCAGAAGCTGGTTAAGTGTTTGTTCTCGTTCGTCATTCCC----- 3120390 Query 9343 TACCACCAG---CACTGCGT---TGCTTTCCCACGGCATCAATCTCATCAATGAAGACAA 9396 ||||||| || ||| | || ||| || |||||||| ||||||| || |||| Sbjct 3120391 -ACCACCAATTCCAGTGCCTCTTTGTCGTCCAACAGCATCAATTTCATCAACAAACACAA 3120449 Query 9397 TACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456 | || ||| |||||| ||| | | |||||||| ||||| || || || | || Sbjct 3120450 TGCAAGGTGCATTTTCCTTGGCCTTCTTGAAGAGATCACGAACTCTAGAAGCACCAATAC 3120509 Query 9457 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCA 9515 ||||||||||||| ||||| | | | | | || | || || |||||| | |||| Sbjct 3120510 CAACAAACATCTCAACAAACTCAGAACCTG-ATATAGAGAAAAATGGGACACCTGCTTCA 3120568 Query 9516 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9575 || |||||||| ||| || | |||||| || || || || ||| | ||||| || Sbjct 3120569 CCAGCAATGGCCTTGGCTAGCAAAGTCTTCCCGGTTCCAGGAGGACCAACAAGGAGAACA 3120628 Query 9576 CCCCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACA 9635 || ||||| || ||| || | | ||||| || | ||| ||||| ||||| Sbjct 3120629 CCTTTAGGAATGCGAGCTCCAACAGCAGTGAACCTCTCGGGCTTCTTAAGAAACTCCACC 3120688 Query 9636 ATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 9679 | ||| || || | |||||| | || | || ||||||| Sbjct 3120689 ACCTCCATGAAATCCTGTTTGGCTTCATCTACTCCAGCAACATC 3120732 >seq4 Length=23425844 Score = 116 bits (128), Expect = 4e-21 Identities = 273/407 (67%), Gaps = 4/407 (1%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| |||||||| || ||||| || || || |||||||| || | || ||||| | Sbjct 22916480 AAACCCATCCATTTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCGTCATTACCACC 22916421 Query 9341 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | ||| || | | || | ||||| |||||||||||||||||||| |||||||| Sbjct 22916420 TCCAAGACCTGCCCCTCTCTGTCTCCCCACAGCATCAATCTCATCAATGAAAACAATACA 22916361 Query 9401 TGGTTGATTTTCGCG-GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 || | ||| | ||| | || || | || || || || || |||||||||| Sbjct 22916360 AGGA-GCTTTGGACTTGGCTTTGTCGAATAAGTCTCGCACTCTCGATGCACCCACACCAA 22916302 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519 |||||| || ||||| | || ||| | ||| || ||| || ||| || |||||| | Sbjct 22916301 CAAACAATTCTACAAACTCTGAGGCAGCACACGAGAAGAATGGCACACCAGCTTCACCAG 22916242 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCC 9579 | | ||| || || |||||||| || || ||||| || | || | || | ||||| Sbjct 22916241 CCACGGCCCGAGCCAGAAGAGTTTTTCCGGTACCCGG-TGGTCCAACAAGAAGACACCCT 22916183 Query 9580 GT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATC 9638 | || || || || ||| | ||| | ||||| | ||| | ||||| || | Sbjct 22916182 TTCGGGATTTTAGCTCCAAGAGCTGTGTACTTATCAGGATTCTTCAAGAAATCAACCACT 22916123 Query 9639 TCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 9685 |||| ||||||| ||||| |||| || ||||||| | ||| Sbjct 22916122 TCTTGCAATTCAAGCTTGGCTTGGTCAGCTCCAGCAACATCAGCAAA 22916076 >seq6 Length=29076228 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 106268 AAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTA 106327 ||||||||| ||| || ||||||||||| || | ||||||||| ||||||| || ||| Sbjct 22591741 AAAATAAATGTATCTGCAAGACCTTGAACCCCAATACCAATAGGCCTGTGTCTCAGATTT 22591682 Query 106328 GACTTTCGCGCAGTCTCAACGGGATA 106353 ||| || ||||||||||| ||||| Sbjct 22591681 GACCTTTTAGCAGTCTCAACAGGATA 22591656 >seq2 Length=23174626 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 106268 AAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTA 106327 ||||||||| ||| || ||||||||||| || | ||||||||| ||||||| || ||| Sbjct 10558305 AAAATAAATGTATCTGCAAGACCTTGAACCCCAATACCAATAGGCCTGTGTCTCAGATTT 10558246 Query 106328 GACTTTCGCGCAGTCTCAACGGGATA 106353 ||| || ||||||||||| ||||| Sbjct 10558245 GACCTTTTAGCAGTCTCAACAGGATA 10558220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979398795600