Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq190 619 2e-172 seq1 178 2e-39 seq3 105 8e-18 seq187 87.8 2e-12 seq7 84.2 3e-11 >seq190 Length=155293 Score = 619 bits (686), Expect = 2e-172 Identities = 739/995 (74%), Gaps = 6/995 (1%) Strand=Plus/Minus Query 179748 TTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTTCTG 179807 ||||| | ||| ||||| || | ||||| || || | || ||||| || ||| || Sbjct 1244 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1185 Query 179808 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 179866 ||||| || || | ||| | |||||| |||| || || | |||||||| |||||||| Sbjct 1184 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTCC 1126 Query 179867 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 179926 || ||||| || ||||| || |||||||| || |||| || || | || || ||||| Sbjct 1125 TCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 1066 Query 179927 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 179986 || || |||||||| || | ||| | || || || ||| | ||||| || || || Sbjct 1065 TATTATTTCTGGTGCTATTATCCCTACCTCTGCAGCTATCGGTTTGCACTTTTACCCAAT 1006 Query 179987 CTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTCGT 180046 |||||||| || || |||| || ||| | || ||||||||||||| | || | || Sbjct 1005 TTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTGT 946 Query 180047 CTTCCACTTCCTGATTGGCATCT-ATGCCTACATGGGTCGTGAGTGGGAACTTTCTTATC 180105 | |||||| | |||| | ||| ||||||||||| |||||||||||| || | Sbjct 945 TCTACACTTCTTACTTGGTGTAGCATGT-TACATGGGTCGAGAGTGGGAACTTAGTTTCC 887 Query 180106 GCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTGCAGCATCT 180164 | |||||||||| || ||||| ||| || |||||||| ||||| || || ||||| || Sbjct 886 GTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCTACT 828 Query 180165 GCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGC 180224 ||||| ||| | | || || | |||||||| || ||||||| ||||| || || Sbjct 827 GCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGA 768 Query 180225 ATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCTGATGCAC 180284 || ||||| || ||||||| |||| |||| ||||| || |||||||||||||| |||||| Sbjct 767 ATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAC 708 Query 180285 CCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCAC 180344 || ||||||||| | || ||||| ||||| |||||||| || || ||| || ||||| Sbjct 707 CCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCAT 648 Query 180345 GGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAACTAC 180404 ||||| |||| || ||| || | | |||||||| |||| ||| || || | Sbjct 647 GGTTCCTTGGTAACTTCTAAGTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 588 Query 180405 GGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATACTTC 180464 ||||||| || |||||||| ||||| || || || ||||| ||||| ||||| || || Sbjct 587 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 528 Query 180465 GGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTG 180524 || || |||||||||| ||||| ||||||||||| ||||| | || |||||||| Sbjct 527 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTA 468 Query 180525 GCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTC 180584 || || |||||||| || || ||||||| ||| || | || | ||||| ||||| ||| Sbjct 467 GCTGCTTGGCCTGTAGTAGGTATCTGGTCCACCGCTTTAGGTATTAGCACTATGGCTTTC 408 Query 180585 AACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAAC 180644 ||| | || |||||||| |||||||| || | ||||| ||||||||||||| | || Sbjct 407 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 348 Query 180645 ACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAAT 180704 || ||||| || | | ||||| ||| ||| ||||||||||||||||| || |||||| Sbjct 347 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 288 Query 180705 GCTCACAACTTCCCACTTGACCTGGCAGCTGCTGA 180739 |||||||||||||| || ||||| || |||| ||| Sbjct 287 GCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGA 253 Score = 536 bits (594), Expect = 1e-147 Identities = 724/1003 (72%), Gaps = 4/1003 (0%) Strand=Plus/Plus Query 181436 GATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGACTACTTCTTTTT 181495 ||||||||| | | ||||| || || ||||| || ||||| || ||| | || ||| Sbjct 34875 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 34934 Query 181496 CCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTTGTTACGTCGTGG 181555 || ||| ||| |||| | || || ||| | || || || || ||||| || || ||| Sbjct 34935 CCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 34994 Query 181556 TACACCCACGGATTGGCGTCTTCCTACCTTGAGGG-TGCTAATTTCCTTACAGCGGCTGT 181614 || ||||| |||||||| |||||| | || || ||| || ||| | || || || || Sbjct 34995 TATACCCATGGATTGGCAAGTTCCTATTTGGAAGGATGC-AACTTCTTAACCGCCGCAGT 35053 Query 181615 GTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAAGCTCA 181674 || || |||||| | | | | || ||| | | |||| ||||| |||||||| || Sbjct 35054 TTCGACTCCTGCTAATAGTTTAGCCCACTCTTTGTTGTTACTATGGGGCCCTGAAGCACA 35113 Query 181675 GGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGG 181734 || ||||| || ||| ||| | || || || ||| ||||||| || |||||||| Sbjct 35114 AGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGG 35173 Query 181735 AGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG-TCTAATCGGAA 181793 || |||| || || ||||| ||| | | ||||||||||||||||| ||| || | Sbjct 35174 TGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCA-AT 35232 Query 181794 TCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGTCTCTGTATTTC 181853 | ||||| || ||||| || || || || || || |||||||| || || |||||||| | Sbjct 35233 TGCGACCTTATAATGCAATCGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATTCC 35292 Query 181854 TCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGA 181913 | || ||||| || || || || |||||||||||||||| ||||| ||||| || || | Sbjct 35293 TGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTA 35352 Query 181914 TTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATA 181973 | || || ||| | || || |||| || |||||||||||||| | || || || |||| Sbjct 35353 TATTTCGATTCATCCTATTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATA 35412 Query 181974 TGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCACGGTGTGACCG 182033 ||||||| ||||| || | |||| | || | || | || ||||| |||| |||| Sbjct 35413 TGATGGGAGTTGCGGGGGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCG 35472 Query 182034 TGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGCATTCGATTCAA 182093 | || ||||| | | | | || || || |||||||| ||| || || | ||| Sbjct 35473 TAGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCCGTGCTTTTAACCCAA 35532 Query 182094 CTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCTTCG 182153 |||||| |||||||| ||||||||||| || || |||||||| ||||| || ||||| | Sbjct 35533 CTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTG 35592 Query 182154 GTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGG 182213 | |||| ||| |||||| | ||||| |||||||||||| | ||||| || || | | Sbjct 35593 GGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTG 35652 Query 182214 GTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACT 182273 || | |||| ||| | | || | ||||||| || || ||||| ||||| ||||||| Sbjct 35653 GTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACT 35712 Query 182274 TTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTTCTACACAAAGA 182333 | || || || |||||| | ||| | ||||| || || || ||||| ||||| || || | Sbjct 35713 TCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACCAAAA 35772 Query 182334 ACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCAACCACATGAGA 182393 | |||||||| || |||||| | ||||| ||| | || | ||||| || ||||| | Sbjct 35773 ATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAA 35832 Query 182394 ACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 || || | ||||||||||| || ||||| | || ||||| || Sbjct 35833 ACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 35875 >seq1 Length=29149675 Score = 178 bits (196), Expect = 2e-39 Identities = 166/211 (79%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 180525 GCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTC 180584 || || |||||||| || || ||||||||||| || |||| | ||| | ||||| ||| Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTC 9383886 Query 180585 AACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAAC 180644 ||| | || |||||||| |||||||| || | ||||| ||||||||||||| | || Sbjct 9383887 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 9383946 Query 180645 ACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAAT 180704 || ||||| || | | ||||| ||| ||| ||||||||||||||||| || |||||| Sbjct 9383947 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 9384006 Query 180705 GCTCACAACTTCCCACTTGACCTGGCAGCTG 180735 |||||||||||||| || ||||| || |||| Sbjct 9384007 GCTCACAACTTCCCTCTAGACCTAGCTGCTG 9384037 >seq3 Length=39782674 Score = 105 bits (116), Expect = 8e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 181878 GTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCC 181937 |||||||||||||||| ||||| ||||| || || || || || ||| | || | ||| Sbjct 23202873 GTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTACTTTTCC 23202932 Query 181938 AGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGG 181997 | || |||||||||||||| | || || || ||||||||||| ||||| || | ||| Sbjct 23202933 AAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGGGGGTGTTGG 23202992 Query 181998 GTGGCGCATTACTCTCTGCAATTCACGGTGTGACCGTGGAGAATAC 182043 | | || || || | || ||||| |||| || || || ||||| Sbjct 23202993 GCGTTGCTTTGCTATGCGCTATTCAGGGTGCTACTGTAGAAAATAC 23203038 >seq187 Length=1555935 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| || ||||||||||||| ||| Sbjct 463050 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTAGGTTCGAAT 462991 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 462990 CCTACTTGGGGAG 462978 >seq7 Length=19226500 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 180642 AACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGT 180701 || || ||||| || | | ||||| ||| ||| ||||||||||||||||| || ||| Sbjct 19048888 AATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGT 19048947 Query 180702 AATGCTCACAACTTCCCACTTGACCTGGC 180730 ||||||||||||||||| || ||||| || Sbjct 19048948 AATGCTCACAACTTCCCTCTAGACCTAGC 19048976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610395350307600