Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq190 544 9e-150 seq1 143 3e-29 seq2 98.7 1e-15 seq5 91.5 2e-13 seq7 87.8 2e-12 >seq190 Length=155293 Score = 544 bits (602), Expect = 9e-150 Identities = 694/953 (73%), Gaps = 2/953 (0%) Strand=Plus/Minus Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATC 169500 |||| |||||||||||| | ||||| || |||| | || ||| | | ||| || || Sbjct 1204 TTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATT 1146 Query 169501 GTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGT 169560 |||| |||||||| || ||||| || ||||| || || || | ||||| || | || Sbjct 1145 ATTGCCTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGA 1086 Query 169561 TCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATC 169620 ||| | | || || ||||| || || |||||||| || | || | || |||||| Sbjct 1085 TCTCTACTTTACGGAAACAATATTATTTCTGGTGCTATTATCCCTACCTCTGCAGCTATC 1026 Query 169621 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGT 169680 || | ||||| |||||||| |||||||| || | |||||||||||||| || || ||| Sbjct 1025 GGTTTGCACTTTTACCCAATTTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAACGGT 966 Query 169681 GGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGA 169740 ||||||||| || | | | | |||||| | ||||| | || |||||||| || Sbjct 965 GGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCATGTTACATGGGTCGA 906 Query 169741 CAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 169800 |||||||||| | | | | || |||||||||||||| ||||||||| || || Sbjct 905 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 846 Query 169801 CCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCT 169860 || || | || || ||||| ||||| | |||||| ||||||| || || ||| Sbjct 845 CCTGTTGCAGCAGCTACTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCT 786 Query 169861 GATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAG 169920 || |||||||| ||||| ||||| |||||||||||||| ||| | || ||||| || ||| Sbjct 785 GACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAG 726 Query 169921 CATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCT 169980 || ||||| || ||||| || ||||||||| ||| ||||| || | ||||| || || Sbjct 725 CACAACATCCTTATGCACCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 666 Query 169981 TTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAG 170040 ||||| || ||||||||||| | || ||||| | ||||| ||||| ||||| Sbjct 665 CTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAAGTTGATCAGGGAAACCACAGAA 606 Query 170041 CAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTA 170100 | || || || | ||||| | ||||| ||||| |||||||| || || || ||| Sbjct 605 AATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTA 546 Query 170101 GCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGA 170160 || || || ||||| ||||| || | |||||||| |||||| ||||||||||| | Sbjct 545 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGT 486 Query 170161 AGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGT 170220 | |||| ||||||||||| | || ||||| ||| || | |||| ||| || | ||| Sbjct 485 TCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTCCACCGCTTTAGGT 426 Query 170221 ATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCT 170280 || |||| ||||| |||||||| ||||||||||| || |||||||| || |||||| | Sbjct 425 ATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGT 366 Query 170281 AACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAA 170340 | || | | || |||| |||| || | ||| | || || | ||||||||| Sbjct 365 CAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAA 306 Query 170341 GTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGA 170393 |||||||||||| | ||||| ||||||||||| ||||||||||| ||| ||| Sbjct 305 GTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGA 253 Score = 376 bits (416), Expect = 3e-99 Identities = 705/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 || ||| || | || ||||||||| ||| || ||||| || || |||| ||||| ||| Sbjct 34863 TTCGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 34922 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | |||||||| || | | |||| |||||||| ||| || ||||| Sbjct 34923 CTATTGCTCTTTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTT 34982 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || ||||||||||| ||||| | || || ||| | || ||||| |||||| || Sbjct 34983 GTAACTTCATGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGATGCAACTTCTTA 35042 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 170768 || || |||||||| || |||| | | | || | | |||| || ||||| Sbjct 35043 ACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCCCACTCTTTGTTGTTACTATGGGGC 35102 Query 170769 CCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTA 170828 |||||||||||||| ||| |||||||| ||| | || ||| | |||| ||||| Sbjct 35103 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 35162 Query 170829 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGA 170888 || | || || | || ||||| |||||||||||| | | |||||||| | || || Sbjct 35163 GCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGA 35222 Query 170889 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 170948 ||| | ||||||| || ||| |||||||||| | || || || || | Sbjct 35223 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCGGGCCCAATTGCTGTTTTTGTT 35282 Query 170949 AGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGT 171008 | || ||||| ||||||||||||||| |||||||||| || || || ||| Sbjct 35283 TCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 35342 Query 171009 GTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 171068 || ||||| || ||||| | ||| |||| | ||||| || || || |||||||| Sbjct 35343 GTAGCAGCTATATTTCGATTCATCCTATTTTTCCAAGGGTTTCATAATTGGACATTGAAC 35402 Query 171069 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCAT 171128 |||||||| |||||||| ||||| || || | || | || | |||| || |||||| Sbjct 35403 CCATTTCATATGATGGGAGTTGCGGGGGTATTGGGCGCTGCTCTGCTATGCGCTATTCAT 35462 Query 171129 GGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAAAATT 171188 ||||| || || | || || || | ||| | || ||| | Sbjct 35463 GGTGCTACCGTAGAAAATACCTTATTTGAGG------------ATGGGGAT-----GGTG 35505 Query 171189 CAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATT 171248 |||| ||||||||||| ||| | || || || | ||||||||||| ||| | Sbjct 35506 CAAA----TACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTC 35561 Query 171249 ACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTA 171308 || || ||| | || ||||| || || ||||| ||||||| || || ||| | | ||| Sbjct 35562 ACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 35621 Query 171309 CACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 171368 || ||| ||||||| || || || || | ||| | |||| || | || | || Sbjct 35622 CATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTT 35681 Query 171369 GGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAA 171428 ||||| || || ||||| | || || || || || ||||| || || | ||||| ||| Sbjct 35682 GGTCTGGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAA 35741 Query 171429 GACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 171488 || || || || ||||||||||| || || ||||| || | || |||||||| | || Sbjct 35742 GATCCGGAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCT 35801 Query 171489 TGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCA 171548 |||||| | | || || || ||||| ||| | ||||||| || || || |||| Sbjct 35802 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCC 35861 Query 171549 AGAGGTAACGCACTTTAA 171566 | || ||||| |||||| Sbjct 35862 CGTGGAAACGCTCTTTAA 35879 >seq1 Length=29149675 Score = 143 bits (158), Expect = 3e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 170188 CCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACTTGAAT 170247 ||||| ||| || | ||||| ||| || ||||||| || | ||||| |||||||| ||| Sbjct 9383836 CCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTCAACTTAAAT 9383895 Query 170248 GGTTTCAACTTTAACCAATCAGTTGTTGATGCTAACGGAAAAATCGTCCCAACATGGGGT 170307 |||||||| || |||||||| || |||||| | | || | | || |||| | Sbjct 9383896 GGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCT 9383955 Query 170308 GATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAATGCACACAAC 170367 ||| || | ||| | || || | ||||||||||||||||||||| | ||||| |||||| Sbjct 9383956 GATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAAC 9384015 Query 170368 TTCCCACTAGACCTAGC 170384 ||||| ||||||||||| Sbjct 9384016 TTCCCTCTAGACCTAGC 9384032 >seq2 Length=23174626 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 153255 AACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCT 153314 ||| || | ||||||||| |||||| || || ||||| |||||||||||||| || Sbjct 16167321 AACATTATGGAGAATCCTGCTTGGTATACTCAGTATACTCCATATCAAGCTGAGATTTCA 16167380 Query 153315 CAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTA 153374 || || | | ||| |||| | ||||| ||||| | |||||||| ||||| || | Sbjct 16167381 CAAGGTCGTCTTGAATCTTTGCTTAATTATCAAACTTTAATCACAGATCTTACTGGTCTC 16167440 Query 153375 CCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 || || | || || || | | ||||||| ||||||||| || ||||| ||| Sbjct 16167441 CCTATGTCCAATGCTTCATTGCTTGATGAAGGAACTGCAGCTGCTGAAGCCATG 16167494 >seq5 Length=28023477 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 || ||| || | || ||||||||| ||| || ||||| || || |||| ||||| ||| Sbjct 18678863 TTCGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 18678804 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | |||||||| || | | |||| |||||||| ||| || ||||| Sbjct 18678803 CTATTGCTCTTTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTT 18678744 Query 170649 GTTACATCATGGTATACACATGG 170671 || || ||||||||||| ||||| Sbjct 18678743 GTAACTTCATGGTATACCCATGG 18678721 >seq7 Length=19226500 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 170299 ACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAAT 170358 || |||| |||| || | ||| | || || | ||||||||||||||||||||| | ||| Sbjct 19048891 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 19048950 Query 170359 GCACACAACTTCCCACTAGACCTAGC 170384 || ||||||||||| ||||||||||| Sbjct 19048951 GCTCACAACTTCCCTCTAGACCTAGC 19048976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579211424369600