Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq190 598 5e-166 seq1 134 2e-26 seq7 89.7 6e-13 >seq190 Length=155293 Score = 598 bits (662), Expect = 5e-166 Identities = 730/993 (74%), Gaps = 2/993 (0%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | ||| |||| |||||| | ||| | ||||| |||| ||||| ||||| || Sbjct 1244 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1185 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| ||||| || ||| | | ||| || ||| |||| || |||||||| || Sbjct 1184 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATTGCCTTCATTGCTGCTCC 1126 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | |||||||| | || ||||| | || |||||||| Sbjct 1125 TCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 1066 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || || || ||||| || | || | || || |||||| | ||||| |||||||| Sbjct 1065 TATTATTTCTGGTGCTATTATCCCTACCTCTGCAGCTATCGGTTTGCACTTTTACCCAAT 1006 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 ||||||||| ||| | | ||||| |||||||| || ||||||||||| || | | | Sbjct 1005 TTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTGT 946 Query 168790 CTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAG 168849 | |||||| || | || | | ||||||||| || |||||||| | | | | Sbjct 945 TCTACACTTCTTACTTGGTGTAGCATGTTACATGGGTCGAGAGTGGGAACTTAGTTTCCG 886 Query 168850 ACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGC 168909 || |||||| | |||||||| |||||| |||||||| || || | ||||| ||| Sbjct 885 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCTACTGC 826 Query 168910 AGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAAT 168969 || ||| | | |||||| ||||||| || || ||||| ||||||||||||||||| Sbjct 825 TGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAAT 766 Query 168970 TTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCC 169029 ||||| || |||||||||||| | |||||||| || ||||||||||| |||||||| || Sbjct 765 CTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 706 Query 169030 CTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGG 169089 ||||| ||| ||| ||||| ||| | ||||| || || |||||| || |||||||| Sbjct 705 ATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 646 Query 169090 TTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGG 169149 ||| | ||||| ||| | ||||| || || || || | |||||| || | || Sbjct 645 TTCCTTGGTAACTTCTAAGTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 586 Query 169150 TTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGG 169209 ||||| ||||||||||| |||||||| |||||||| || || || ||||| || || || Sbjct 585 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 526 Query 169210 TAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 169269 |||| |||||||| ||||| |||||||||||||| | | | || ||||||||||| Sbjct 525 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGC 466 Query 169270 AGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 169329 | | || || ||| || | |||| ||| || | ||||| | || ||||| ||||| Sbjct 465 TGCTTGGCCTGTAGTAGGTATCTGGTCCACCGCTTTAGGTATTAGCACTATGGCTTTCAA 406 Query 169330 CTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTAC 169389 ||| || || || || || |||||||| || || ||| | | ||| | ||| ||| Sbjct 405 CTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 346 Query 169390 ATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGC 169449 |||| ||| | ||||| | || || |||||||||||||| |||||||| ||||| || Sbjct 345 CTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGC 286 Query 169450 TCACAACTTCCCACTAGACTTAGCATCTGCTGA 169482 |||||||||||| |||||| |||| ||| ||| Sbjct 285 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGA 253 >seq1 Length=29149675 Score = 134 bits (148), Expect = 2e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 169277 CCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAAC 169336 || || ||| || | ||||| ||| || ||||||| | | ||||| |||||||| || Sbjct 9383836 CCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTCAACTTAAAT 9383895 Query 169337 GGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGT 169396 || || || || |||||||| || || ||| | | ||| | ||| ||| |||| | Sbjct 9383896 GGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCT 9383955 Query 169397 GACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAAC 169456 || | ||||| | || || |||||||||||||| |||||||| ||||| ||||||||| Sbjct 9383956 GATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAAC 9384015 Query 169457 TTCCCACTAGACTTAGC 169473 ||||| |||||| |||| Sbjct 9384016 TTCCCTCTAGACCTAGC 9384032 >seq7 Length=19226500 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 169387 TACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAA 169446 ||| |||| ||| | ||||| | || || |||||||||||||| |||||||| ||||| Sbjct 19048890 TACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAA 19048949 Query 169447 CGCTCACAACTTCCCACTAGACTTAGC 169473 |||||||||||||| |||||| |||| Sbjct 19048950 TGCTCACAACTTCCCTCTAGACCTAGC 19048976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564440259451200