Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq190 600 1e-166 seq1 172 6e-38 seq3 129 7e-25 seq7 84.2 2e-11 seq5 82.4 9e-11 >seq190 Length=155293 Score = 600 bits (664), Expect = 1e-166 Identities = 733/992 (74%), Gaps = 6/992 (1%) Strand=Plus/Minus Query 162384 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 162443 |||||| | ||| |||| || | ||||| || || | || ||||| || || | Sbjct 1245 TTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 1186 Query 162444 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 162502 |||||| || || | ||| | ||||| ||||| || || | |||||| | ||||||| Sbjct 1185 GATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTC 1127 Query 162503 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 162562 | || ||||| || || || || |||||||| || |||| || || | || || |||| Sbjct 1126 CTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 1067 Query 162563 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 162622 | || || |||||||| || | || | || || || ||| | ||||| || || | Sbjct 1066 ATATTATTTCTGGTGCTATTATCCCTACCTCTGCAGCTATCGGTTTGCACTTTTACCCAA 1007 Query 162623 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 162682 | |||||||| || || ||||||| ||| | || ||||||||||||| | || | | Sbjct 1006 TTTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTG 947 Query 162683 TATTCCACTTCCTGATCGGCATCT-ATGCCTACATGGGACGTGAATGGGAACTCTCTTAC 162741 | | |||||| | | || | ||| |||||||| || || |||||||| || | Sbjct 946 TTCTACACTTCTTACTTGGTGTAGCATGT-TACATGGGTCGAGAGTGGGAACTTAGTTTC 888 Query 162742 CGTCTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCTGCACCTGTTGCAGCAGCATC 162800 ||||| ||||||||||| ||||| ||| || ||||| || || |||||||||||||| | Sbjct 887 CGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCTAC 829 Query 162801 GGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGG 162860 || || ||| || | || || | |||||||| || ||||||| ||||| | || Sbjct 828 TGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGG 769 Query 162861 TATCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCA 162920 ||| |||||| ||||||| |||| |||| ||||| || ||||||||||| || ||||| Sbjct 768 AATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCA 709 Query 162921 TCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCA 162980 || ||||||||||| ||||| || ||||| ||||| || || || |||||||| ||||| Sbjct 708 CCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCA 649 Query 162981 CGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTA 163040 ||||| ||||| || ||| | || | || || || |||| ||| || || | Sbjct 648 TGGTTCCTTGGTAACTTCTAAGTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 589 Query 163041 TGGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTT 163100 ||||||| ||||||||||| ||||| || || || ||||| || || |||||||| || Sbjct 588 AGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTT 529 Query 163101 CGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCT 163160 || || ||||||||||||||||| ||||||||||| ||||| || || |||||||| Sbjct 528 TGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCT 469 Query 163161 TGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATT 163220 ||||| |||||||| || || ||||||| |||||| | || | || ||||| || Sbjct 468 AGCTGCTTGGCCTGTAGTAGGTATCTGGTCCACCGCTTTAGGTATTAGCACTATGGCTTT 409 Query 163221 CAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAA 163280 |||| | || |||||||| |||||||| || | ||||| |||| |||||||| | || Sbjct 408 CAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAA 349 Query 163281 CACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAA 163340 |||||||| || || | |||||||| | | ||||||||||||||||| || || || Sbjct 348 TACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAA 289 Query 163341 TGCTCACAACTTCCCACTTGACCTGGCAGCTG 163372 ||||||||||||||| || ||||| || |||| Sbjct 288 TGCTCACAACTTCCCTCTAGACCTAGCTGCTG 257 Score = 511 bits (566), Expect = 5e-140 Identities = 727/1013 (72%), Gaps = 10/1013 (1%) Strand=Plus/Plus Query 163631 TGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGATTACTACTTC 163690 ||||||||||| | | | || |||||||| ||| | |||||||| || || | || Sbjct 34873 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 34932 Query 163691 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTCGTTACGTCGT 163750 |||| ||| ||| | || | || || ||| |||| |||||||| || || || || | Sbjct 34933 TTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 34992 Query 163751 GGTACACCCATGGACTGGCAACTTCCTATCTTG-AGGGTGCTAATTTTCTCACAGCGGCT 163809 |||| ||||||||| |||||| ||||||| | | ||| ||| || || | || || || Sbjct 34993 GGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGATGC-AACTTCTTAACCGCCGCA 35051 Query 163810 GTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGC 163868 || || || |||||| | | | | || ||| || || || || ||||| ||||| || Sbjct 35052 GTTTCGACTCCTGCTAATAGTTTAGCCCACTCT-TTGTTGTTACTATGGGGCCCTGAAGC 35110 Query 163869 TCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCA 163928 || || ||||| || ||| ||| | || || || |||| |||||| || ||||| Sbjct 35111 ACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCA 35170 Query 163929 CGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCG-CCTGATTG 163987 ||| || || | || || ||||||||| | || ||||||||||||||||| ||| || Sbjct 35171 CGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTG-TTC 35229 Query 163988 GAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCT 164047 | | |||| || ||||| || || ||||| || || |||||||| || ||| ||| | Sbjct 35230 AATTGCGACCTTATAATGCAATCGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTAT 35289 Query 164048 TTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAG 164107 | || || || || || ||||| || |||||||||| || || |||||| || |||| Sbjct 35290 TCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAG 35349 Query 164108 CAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCC 164167 | || || ||||| || |||| | ||||| |||||||| ||||| |||||||| || | Sbjct 35350 CTATATTTCGATTCATCCTATTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTC 35409 Query 164168 ATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCACGGAGTCA 164227 |||||||||||||||| || || | |||| || |||||| |||||||| || | | Sbjct 35410 ATATGATGGGAGTTGCGGGGGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTA 35469 Query 164228 CAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATT 164287 | || |||||||| || | ||| ||||| || ||||| || || || ||| | Sbjct 35470 CCGTAGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCCGTGCTTTTAACC 35529 Query 164288 CGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCT 164347 | || || | ||||| |||||||| ||||||||||| |||||||| ||||| || |||| Sbjct 35530 CAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCT 35589 Query 164348 TCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTA 164407 | || ||||| ||||| || || || ||| | ||||| || ||||| ||||| || || | Sbjct 35590 TTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAA 35649 Query 164408 TGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACG 164467 ||| |||||| || |||| | |||| || || || || || ||||| || | Sbjct 35650 CTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATG 35709 Query 164468 ATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACTTTCTATACCA 164527 | || || ||| || || | ||||| |||||||| || || |||||||||||||||| Sbjct 35710 ACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACCA 35769 Query 164528 AGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTGACCAGC--CAGG 164585 | || || | || |||||||| | ||||| ||| | || | || |||| || | Sbjct 35770 AAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATG 35829 Query 164586 AGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTTTAAT 164638 | ||| || | ||||| || || || || || | || || || ||||||| Sbjct 35830 AAAAC--CTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAAT 35880 >seq1 Length=29149675 Score = 172 bits (190), Expect = 6e-38 Identities = 168/213 (79%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 163162 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACC--ATGGCAT 163219 ||||| |||||||| || || |||||||||||||| |||| || | | || ||||| | Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCT-TTGG-GTATTAGCCCTATGGCTT 9383884 Query 163220 TCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGA 163279 ||||| | || |||||||| |||||||| || | ||||| |||| |||||||| | | Sbjct 9383885 TCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTA 9383944 Query 163280 ACACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCA 163339 | |||||||| || || | |||||||| | | ||||||||||||||||| || || | Sbjct 9383945 ATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTA 9384004 Query 163340 ATGCTCACAACTTCCCACTTGACCTGGCAGCTG 163372 |||||||||||||||| || ||||| || |||| Sbjct 9384005 ATGCTCACAACTTCCCTCTAGACCTAGCTGCTG 9384037 >seq3 Length=39782674 Score = 129 bits (142), Expect = 7e-25 Identities = 139/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 164075 GTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTC 164134 |||||||||| || || |||||| || ||||| || || ||||| || || | | | Sbjct 23202873 GTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTACTTTTCC 23202932 Query 164135 AAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAG 164194 |||| |||||||| ||||| |||||||| || ||||||||||||||||| || | | | Sbjct 23202933 AAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGGGGGTGTTGG 23202992 Query 164195 GCGGAGCATTGCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTGTATGAAGATG 164254 ||| || ||||||| |||||||| || | || || |||||||| || ||| |||| Sbjct 23202993 GCGTTGCTTTGCTATGCGCTATTCAGGGTGCTACTGTAGAAAATACCTTACTTGAGGATG 23203052 Query 164255 GAGA 164258 | || Sbjct 23203053 GGGA 23203056 >seq7 Length=19226500 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 163279 AACACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGC 163338 || |||||||| || || | |||||||| | | ||||||||||||||||| || || Sbjct 19048888 AATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGT 19048947 Query 163339 AATGCTCACAACTTCCCACTTGACCTGGC 163367 ||||||||||||||||| || ||||| || Sbjct 19048948 AATGCTCACAACTTCCCTCTAGACCTAGC 19048976 >seq5 Length=28023477 Score = 82.4 bits (90), Expect = 9e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 163631 TGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGATTACTACTTC 163690 ||||||||||| | | | || |||||||| ||| | |||||||| || || | || Sbjct 18678853 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 18678794 Query 163691 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTCGTTACGTCGT 163750 |||| ||| ||| | || | || || ||| |||| |||||||| || || || || | Sbjct 18678793 TTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 18678734 Query 163751 GGTACACCCATGGAC 163765 |||| |||||||||| Sbjct 18678733 GGTATACCCATGGAC 18678719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557582675738000