Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq190 628 3e-175 seq1 129 7e-25 seq3 105 8e-18 seq2 102 9e-17 seq7 98.7 1e-15 >seq190 Length=155293 Score = 628 bits (696), Expect = 3e-175 Identities = 728/985 (74%), Gaps = 4/985 (0%) Strand=Plus/Minus Query 167097 TGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCT 167156 ||| | ||||||||| | |||||||| || | || ||||| || ||| ||||||||||| Sbjct 1235 TGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 1176 Query 167157 ACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGA 167215 || || | | ||||| ||||| || || || |||||| | | ||||||||| ||||| Sbjct 1175 ACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTGGA 1117 Query 167216 CATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTC 167275 || |||||||| || ||||| ||| |||| || || | || || ||||| || || || Sbjct 1116 TATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTC 1057 Query 167276 TGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGC 167335 |||||| || | ||| | ||| ||||| ||| | ||||| || || || |||||||| Sbjct 1056 TGGTGCTATTATCCCTACCTCTGCAGCTATCGGTTTGCACTTTTACCCAATTTGGGAAGC 997 Query 167336 AGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTT 167395 || || | || || ||||| ||||| |||||||||| | || | ||| | ||||| Sbjct 996 TGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTGTTCTACACTT 937 Query 167396 CCTGATTGGCATCT-ATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTA 167454 | | |||| | ||| || |||||||| ||||||||||| || |||||| |||| Sbjct 936 CTTACTTGGTGTAGCATGT-TACATGGGTCGAGAGTGGGAACTTAGTTTCCGTCTGGGTA 878 Query 167455 TGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCC 167514 ||||||| ||||| ||||||||| || ||||| || || ||||| ||||||| ||| Sbjct 877 TGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCTACTGCTGTTTTCT 818 Query 167515 TCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTA 167574 | | || || | |||||||| || ||||||| |||||||| || |||||||||| Sbjct 817 TGATTTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTA 758 Query 167575 CATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATA 167634 | ||||||| |||| |||| ||||| || |||||||||||||| |||||||| ||||| | Sbjct 757 CTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACA 698 Query 167635 TGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGG 167694 || | || || ||||| ||||||||||| || || |||||||| ||||| ||||| ||| Sbjct 697 TGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGG 638 Query 167695 TTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGT 167754 | || ||| | || | | |||||||| |||| ||| || || | ||||||| | Sbjct 637 TAACTTCTAAGTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGAT 578 Query 167755 TCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGA 167814 ||||||| || ||||| || ||||| ||||| |||||||||||||| || || || ||| Sbjct 577 TCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGA 518 Query 167815 TCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGC 167874 |||||||||| || ||||||||||| || || | || |||||| | || || |||| Sbjct 517 TCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGC 458 Query 167875 CTGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAACCTGAACG 167934 |||| || |||||||||| |||||| | || | Sbjct 457 CTGTAGTAGGTATCTGGTCCACCGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATG 398 Query 167935 GTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGGGCAG 167994 ||||||| |||||||| ||| | |||||||| ||| || | ||| ||||| | Sbjct 397 GTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTG 338 Query 167995 ACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACT 168054 | | | ||||||||| ||| ||||||||||||||||| || |||||||||||||||| Sbjct 337 ATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACT 278 Query 168055 TCCCTCTCGACCTTGCTGCTGCTGA 168079 ||||||| ||||| ||||||| ||| Sbjct 277 TCCCTCTAGACCTAGCTGCTGTTGA 253 Score = 590 bits (654), Expect = 7e-164 Identities = 741/1014 (73%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 168483 TTCGATGTCCTCGATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGA 168542 |||||| | | ||||||||| | |||| |||||||||||||| |||||||| || Sbjct 34863 TTCGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 34922 Query 168543 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTC 168602 || | || ||||| ||| ||| |||| | || |||||| |||| || || | || Sbjct 34923 CTATTGCTCTTTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTT 34982 Query 168603 GTCACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTT 168662 || || |||||||| || || ||||||||||||||| |||| || ||||| | Sbjct 34983 GTAACTTCATGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGATGCAACTTCTTA 35042 Query 168663 ACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGT 168722 || || |||||| ||||| || || | | | || ||| | || | || ||||| Sbjct 35043 ACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCCCACTCTTTGTTGTTACTATGGGGC 35102 Query 168723 CCTGAGGCACAAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTG 168782 ||||| |||||||| ||||| | ||||||||| | || || || ||| ||||||| Sbjct 35103 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 35162 Query 168783 GCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACG- 168841 || |||||||| ||||||| ||||| ||||||||| | ||||| |||||||| || || Sbjct 35163 GCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGA 35222 Query 168842 TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGT 168901 ||| || | | || || || ||||| || || ||||| || || || ||||||||||| Sbjct 35223 TCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCGGGCCCAATTGCTGTTTTTGT 35281 Query 168902 TAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGG 168961 | || || || || || || || ||||| || ||||||| || || || ||| || Sbjct 35282 TTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGG 35341 Query 168962 GGTCTCAGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAA 169021 || |||| || || |||||| | || || | ||||| || ||||| |||||| |||| Sbjct 35342 TGTAGCAGCTATATTTCGATTCATCCTATTTTTCCAAGGGTTTCATAATTGGACATTGAA 35401 Query 169022 TCCATTTCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCA 169081 ||||||||||||||||| || || || | ||||| | || |||| | || ||||| Sbjct 35402 CCCATTTCATATGATGGGAGTTGCGGGGGTATTGGGCGCTGCTCTGCTATGCGCTATTCA 35461 Query 169082 TGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGC 169141 ||||| ||| ||||| ||||| | | | | ||||| || |||||||| ||| || Sbjct 35462 TGGTGCTACCGTAGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCCGTGC 35521 Query 169142 ATTTGACAGCACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTC 169201 ||| || ||||| | || || || ||||||||||| ||||| ||||| || ||||| Sbjct 35522 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTC 35581 Query 169202 TCAGATCTTTGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGT 169261 || |||||||| |||| || ||||| | ||||| |||||||||||| | ||||| Sbjct 35582 CCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 35641 Query 169262 TCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCG 169321 || || | ||| | |||| ||| | | || | ||||||| || || ||||| || Sbjct 35642 ACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACG 35701 Query 169322 TGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTT 169381 ||| |||||||| ||||| || || ||| | ||||| |||||||| || |||||||| || Sbjct 35702 TGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 35761 Query 169382 CTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCA 169441 ||| ||||| || || ||||| ||||||||| ||||||| ||| | || || ||||| Sbjct 35762 CTATACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 35821 Query 169442 ACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 |||||||| ||| || | ||||||||||| || || ||||| || || || || Sbjct 35822 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 35875 >seq1 Length=29149675 Score = 129 bits (142), Expect = 7e-25 Identities = 121/154 (79%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 167922 TTCAACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTG 167981 |||||| | || |||||||| |||||||| ||| | |||||||| ||| || | Sbjct 9383884 TTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATT 9383943 Query 167982 CCTACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGT 168041 ||| ||||| || | | ||||||||| ||| ||||||||||||||||| || ||| Sbjct 9383944 AATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGT 9384003 Query 168042 AATGCTCACAACTTCCCTCTCGACCTTGCTGCTG 168075 |||||||||||||||||||| ||||| ||||||| Sbjct 9384004 AATGCTCACAACTTCCCTCTAGACCTAGCTGCTG 9384037 >seq3 Length=39782674 Score = 105 bits (116), Expect = 8e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 168937 GTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTTCTCTTCCTAC 168996 ||||||| || || || ||| || || |||| || || |||||| | || | | | Sbjct 23202873 GTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTACTTTTCC 23202932 Query 168997 AAGGATTCCATAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTGG 169056 |||| || ||||| |||||| |||| ||||||||||||||||| || || || | |||| Sbjct 23202933 AAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGGGGGTGTTGG 23202992 Query 169057 GAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATAC 169102 | | || ||||| | || ||||| |||| ||| ||||| ||||| Sbjct 23202993 GCGTTGCTTTGCTATGCGCTATTCAGGGTGCTACTGTAGAAAATAC 23203038 >seq2 Length=23174626 Score = 102 bits (112), Expect = 9e-17 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 167097 TGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCT 167156 ||| | || |||||| | |||||||| || | || ||||| || ||| ||||||||||| Sbjct 3799821 TGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 3799762 Query 167157 ACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGA 167215 || || | | |||| | ||||| || || || | |||| | | ||||||||| ||||| Sbjct 3799761 ACCTTATTGACCGCAA-CTTCTGTATTTATTATTGTCTTCATTGCTGCTCCTCCAGTGGA 3799703 Query 167216 CATCGATGGTATCCGCGAACCAGTTGCTGG 167245 || |||||||| || ||||| ||| |||| Sbjct 3799702 TATTGATGGTATTCGTGAACCTGTTTCTGG 3799673 >seq7 Length=19226500 Score = 98.7 bits (108), Expect = 1e-15 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 167984 TACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAA 168043 ||| ||||| || | | ||||||||| ||| ||||||||||||||||| || ||||| Sbjct 19048890 TACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAA 19048949 Query 168044 TGCTCACAACTTCCCTCTCGACCTTGCTG 168072 |||||||||||||||||| ||||| |||| Sbjct 19048950 TGCTCACAACTTCCCTCTAGACCTAGCTG 19048978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560606668556000