Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq190 531 8e-146 seq1 113 7e-20 >seq190 Length=155293 Score = 531 bits (588), Expect = 8e-146 Identities = 701/972 (72%), Gaps = 0/972 (0%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 ||||| || ||| | ||| |||| ||||||||||| | ||||| ||| | | | | Sbjct 1223 ACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 1164 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||| ||||| ||||| || ||||| || || || Sbjct 1163 GCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATT 1104 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || || ||| |||| ||| || | || || ||||| || || ||||||||| || | Sbjct 1103 CGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCTATTATC 1044 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| || || ||||| || ||||| ||||| || |||||||| || | ||||| Sbjct 1043 CCTACCTCTGCAGCTATCGGTTTGCACTTTTACCCAATTTGGGAAGCTGCTTCCGTTGAT 984 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 |||||| | ||||| ||||| |||| | || || | | |||||| | ||||| | Sbjct 983 GAATGGTTATACAACGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTA 924 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 | ||| || || ||||||||||| || | | | |||||| | |||||||| Sbjct 923 GCATGTTACATGGGTCGAGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATT 864 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 |||||| || || || ||||| | || || ||| || ||| | | || ||| | Sbjct 863 GCTGTTGCATATTCAGCTCCTGTTGCAGCAGCTACTGCTGTTTTCTTGATTTACCCAATT 804 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 ||||| || || ||||| | |||||| || ||||||||||| || ||||||| |||| Sbjct 803 GGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATG 744 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| |||||||||||||||||||| || |||||||||||||||||||||||||| ||| Sbjct 743 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGTGTAGCT 684 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| ||||| || || | ||| ||| ||||| ||||| | || || ||| | Sbjct 683 GGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAAGTTG 624 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 ||||| || || || || | |||||| || | ||||||| ||||| |||||||| Sbjct 623 ATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAA 564 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034 ||||| || || ||||||||||| || ||||| ||||| || | ||||||||||| || Sbjct 563 GAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCT 504 Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094 |||||||||||| | | | || |||||||| || || | ||||| | ||||| Sbjct 503 AGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATC 444 Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154 ||| | || || | ||| | |||||||| |||||| | || |||||||| |||||| Sbjct 443 TGGTCCACCGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAAC 384 Query 216155 CAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGA 216214 || ||||| || || ||| || ||| ||| ||||| || || ||||| | Sbjct 383 CAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGT 324 Query 216215 GCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTG 216274 || |||||||||||||| ||||| || ||||| |||||||||||||| ||||| | Sbjct 323 GCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTA 264 Query 216275 GCTGCTGCTGAA 216286 ||||||| |||| Sbjct 263 GCTGCTGTTGAA 252 >seq1 Length=29149675 Score = 113 bits (124), Expect = 7e-20 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 216120 CTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTA 216179 ||||||| |||||| | || |||||||| |||||||| ||||| || || ||| Sbjct 9383876 CTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTC 9383935 Query 216180 AAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGC 216239 || ||| ||| ||||| || || ||||| | || |||||||||||||| |||| Sbjct 9383936 GTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGC 9383995 Query 216240 ACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCTG 216281 | || ||||| |||||||||||||| ||||| | ||||||| Sbjct 9383996 ATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTG 9384037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745079830431200