Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq190 664 0.0 seq1 192 7e-44 seq3 111 2e-19 seq7 100 3e-16 >seq190 Length=155293 Score = 664 bits (736), Expect = 0.0 Identities = 732/969 (76%), Gaps = 8/969 (1%) Strand=Plus/Minus Query 181821 AATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACC 181880 || ||||| || | || ||||||||||| |||||||||| || | ||| | ||||| Sbjct 1217 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1158 Query 181881 ATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGA 181939 ||||| || || |||| ||| | || || ||||| || ||||| || ||||| || || Sbjct 1157 -TCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGA 1099 Query 181940 ACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATC 181999 ||| || |||| || || | || || ||||| || || ||||||||| || |||| | Sbjct 1098 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCTATTATCCCTAC 1039 Query 182000 CTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTG 182059 ||| || || ||| | ||||| |||||||| ||||||||||| || ||||||| || Sbjct 1038 CTCTGCAGCTATCGGTTTGCACTTTTACCCAATTTGGGAAGCTGCTTCCGTTGATGAATG 979 Query 182060 GCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGC 182119 | | || ||||||||||||| | || ||||| | |||||| | | || | || || Sbjct 978 GTTATACAACGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG--TGTA-GC 922 Query 182120 CT---ACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTG 182176 | ||||||| || |||||||||||| || ||| | ||||||||||| ||||| Sbjct 921 ATGTTACATGGGTCGAGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGC 862 Query 182177 TGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGG 182236 ||| ||||| || ||||| || || ||||| ||||||| ||||| | || || | || Sbjct 861 TGTTGCATATTCAGCTCCTGTTGCAGCAGCTACTGCTGTTTTCTTGATTTACCCAATTGG 802 Query 182237 TCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTT 182296 |||||| || || || | ||||| || |||||||| || || ||||||| ||| | Sbjct 801 TCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGAT 742 Query 182297 GGTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGG 182356 || ||||| |||||||||||||| |||||||| || ||||||||||| |||||||| || Sbjct 741 TGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGTGTAGCTGG 682 Query 182357 TGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGT 182416 ||||||||| || || || || ||||| ||||| ||||| ||||| || ||| | | Sbjct 681 TGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAAGTTGAT 622 Query 182417 CCGTGAGACGACTGAGCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGA 182476 | | || || || || | || || || | ||||||| ||||||||||| ||||| Sbjct 621 CAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGA 562 Query 182477 GACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATC 182536 || ||||| ||||| || || ||||| || || || || |||||||||||||| || Sbjct 561 AACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 502 Query 182537 ATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTG 182596 ||||||||||| ||||| || || |||||||| ||||| |||||||| || || ||||| Sbjct 501 TTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTG 442 Query 182597 GTTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCA 182656 || |||||| | ||| | ||| ||||| |||||| | || |||||||| |||||||| Sbjct 441 GTCCACCGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCA 382 Query 182657 GTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGC 182716 || | ||||| |||| |||||||| |||| || ||||| ||| | | |||||||| Sbjct 381 ATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGC 322 Query 182717 TGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTAGATCTTGC 182776 | |||||||||||||||||||||||| ||||| || ||||||||||| ||||| || || Sbjct 321 TAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 262 Query 182777 TGCTGCTGA 182785 ||||| ||| Sbjct 261 TGCTGTTGA 253 Score = 594 bits (658), Expect = 6e-165 Identities = 749/1023 (73%), Gaps = 8/1023 (1%) Strand=Plus/Plus Query 183181 TTCGATGTCCTTGATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGA 183240 |||||| | | ||||||||| | | || || || || ||||| || ||||| || Sbjct 34863 TTCGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 34922 Query 183241 CTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTT 183300 || | || |||| ||| ||| ||||| | || |||||| |||| || ||| | ||| Sbjct 34923 CTATTGCTCTTTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTT 34982 Query 183301 GTTACGAGTTGGTATACCCATGGACTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCT 183359 || || ||||||||||||||| | || ||||||| | ||||| ||| ||||| | Sbjct 34983 GTAACTTCATGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGATGC-AACTTCTT 35041 Query 183360 TACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGG 183419 || || || || ||||| |||||| | | | | || ||| | ||||||| ||||| Sbjct 35042 AACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCCCACTCTTTGTTGTTACTATGGGG 35101 Query 183420 TCCTGAGTCTCAAGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGT 183479 ||||| | ||||| || ||| || ||||| ||| | || || || |||| |||||| Sbjct 35102 CCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGT 35161 Query 183480 GGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCG 183539 || ||||||||||| || | || || ||||||||| | || || |||||||||||||| Sbjct 35162 TGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCG 35221 Query 183540 CTTGATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGT 183599 | || | || ||||| ||||| || || ||||| || || |||||||||||||| Sbjct 35222 ATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCGGGCCCAATTGCTGTTTTTGT 35281 Query 183600 CAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGG 183659 ||||||||| || |||||||| ||||||||| ||||||||||| |||||||| || Sbjct 35282 TTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGG 35341 Query 183660 GGTAGCAGCAATCTTTAGAT---TCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTT 183716 |||||||| || ||| ||| ||||||| |||| ||||||| || || ||||| || Sbjct 35342 TGTAGCAGCTATATTTCGATTCATCCTATTTTTCC--AAGGGTTT-CATAATTGGACATT 35398 Query 183717 AAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTAT 183776 ||||| || ||||||||||||||||| || || | || | || || || | ||||| Sbjct 35399 GAACCCATTTCATATGATGGGAGTTGCGGGGGTATTGGGCGCTGCTCTGCTATGCGCTAT 35458 Query 183777 CCATGGTGTCACAGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAA 183836 ||||||| || ||||| ||||| || | ||| ||||| || ||||| |||||| Sbjct 35459 TCATGGTGCTACCGTAGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCCG 35518 Query 183837 GGCATTTGATTCCACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTG 183896 || ||| | | ||||||| ||||| || ||||| ||||| || || || || || || Sbjct 35519 TGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTG 35578 Query 183897 GTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTT 183956 ||| |||||||| |||||||| ||| |||||| |||||||| || ||||||||||| || Sbjct 35579 GTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 35638 Query 183957 TGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCT 184016 ||| || || | ||| | ||| | | || |||| | |||| || || || || || Sbjct 35639 TGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCT 35698 Query 184017 TCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGAC 184076 ||||| ||||| || || ||| || ||| | ||||| |||||||| ||||||||||| Sbjct 35699 ACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGAC 35758 Query 184077 GTTCTACACAAAGAACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGA 184136 ||||| || || || || || | || ||||| | ||||| ||| | || || || Sbjct 35759 TTTCTATACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGA 35818 Query 184137 TCAACCACATGAGAATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTG 184196 ||| || ||||| || ||||||| || |||||||| |||| | || || ||||||| Sbjct 35819 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTA 35878 Query 184197 ATG 184199 ||| Sbjct 35879 ATG 35881 >seq1 Length=29149675 Score = 192 bits (212), Expect = 7e-44 Identities = 169/211 (80%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 182571 GCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCATTC 182630 ||||| |||||||| || || |||||||||||||| | ||| | | | ||||| ||| Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTC 9383886 Query 182631 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAAC 182690 ||| | || |||||||| |||||||| || | ||||| |||| |||||||| |||| Sbjct 9383887 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 9383946 Query 182691 ACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAAC 182750 || ||||| ||| | | ||||||||| |||||||||||||||||||||||| ||||| Sbjct 9383947 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 9384006 Query 182751 GCACACAACTTCCCACTAGATCTTGCTGCTG 182781 || ||||||||||| ||||| || ||||||| Sbjct 9384007 GCTCACAACTTCCCTCTAGACCTAGCTGCTG 9384037 >seq3 Length=39782674 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 183629 AGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGAT---TCCTAT 183685 ||||| ||||||||||| |||||||| || |||||||| || ||| ||| ||||| Sbjct 23202867 AGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTAC 23202926 Query 183686 TGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCTG 183745 | |||| ||||||| || || ||||| || ||||| || ||||||||||||||||| | Sbjct 23202927 TTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGG 23202983 Query 183746 GTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGTAGAGAATACATTGT 183805 | | | || | || | || | ||||| || |||| || ||||| ||||| || Sbjct 23202984 GGGTGTTGGGCGTTGCTTTGCTATGCGCTATTCAGGGTGCTACTGTAGAAAATACCTTAC 23203043 Query 183806 ATGAAGATGGAGA 183818 ||| ||||| || Sbjct 23203044 TTGAGGATGGGGA 23203056 >seq7 Length=19226500 Score = 100 bits (110), Expect = 3e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 182686 TTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGC 182745 |||| || ||||| ||| | | ||||||||| |||||||||||||||||||||||| | Sbjct 19048886 TTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAAC 19048945 Query 182746 GTAACGCACACAACTTCCCACTAGATCTTGCTG 182778 |||| || ||||||||||| ||||| || |||| Sbjct 19048946 GTAATGCTCACAACTTCCCTCTAGACCTAGCTG 19048978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611694547222000