Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq190 677 0.0 seq1 192 7e-44 seq7 102 9e-17 seq2 100 3e-16 seq3 96.9 4e-15 >seq190 Length=155293 Score = 677 bits (750), Expect = 0.0 Identities = 731/963 (76%), Gaps = 4/963 (0%) Strand=Plus/Minus Query 164791 AACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGCCGCTACA 164850 ||||||||||| | || ||||| |||||| | |||||||| || | |||| || Sbjct 1217 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1158 Query 164851 ATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGA 164909 | ||| ||||||| ||| ||||| |||||||| || ||||| ||||||||||||||||| Sbjct 1157 -TCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGA 1099 Query 164910 ACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTC 164969 |||||| | || |||||| | ||||| ||||| || || ||||||||| | | || | Sbjct 1098 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCTATTATCCCTAC 1039 Query 164970 TTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATG 165029 ||| || ||||| | ||||| || || |||||||||||||| || | |||||||| Sbjct 1038 CTCTGCAGCTATCGGTTTGCACTTTTACCCAATTTGGGAAGCTGCTTCCGTTGATGAATG 979 Query 165030 GTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTG 165089 ||| ||||||||||||||||| || | |||| | |||||| | | |||||||| || Sbjct 978 GTTATACAACGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCATG 919 Query 165090 CTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGT 165149 ||||||||||| ||||||||||| || ||| || |||||||||||||||||| || Sbjct 918 TTACATGGGTCGAGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 859 Query 165150 AGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCA 165209 |||||| || ||||| || || ||| | || |||||| || | || || | ||||| Sbjct 858 TGCATATTCAGCTCCTGTTGCAGCAGCTACTGCTGTTTTCTTGATTTACCCAATTGGTCA 799 Query 165210 AGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGT 165269 ||| || || ||||| ||||||||||| || |||||||||||||| |||| ||| | || Sbjct 798 AGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGT 739 Query 165270 CTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGT 165329 ||||| || || || ||||| |||||||| || ||||||||| | || || ||||| || Sbjct 738 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGTGTAGCTGGTGT 679 Query 165330 ATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACTCG-TCC 165388 |||||| || || || ||| |||||||||||| |||| || | || | | | || Sbjct 678 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGG-TTCCTTGGTAACTTCTAAGTTGATCA 620 Query 165389 GCGAGACAACTGAAACAGAGAGTCAGAACTACGGTTATAAGTTTGGACAAGAAGAAGAGA 165448 | || || || |||| || | || | ||||| | || || ||||| ||||| | Sbjct 619 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAA 560 Query 165449 CCTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACGCATCCT 165508 | ||||| ||||| ||||| || || || || || || | || |||||||| || | Sbjct 559 CTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTT 500 Query 165509 TCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGT 165568 ||||||| || ||||| | || |||||||| || || ||||||||||| |||||||||| Sbjct 499 TCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGT 440 Query 165569 TCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGT 165628 ||| ||| | ||| ||||||| ||||| |||||| | || |||||||| |||||||| | Sbjct 439 CCACCGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAAT 380 Query 165629 CTATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGACGTTCTGAACCGTGCTG 165688 || | ||||||||||| | || ||| |||||||| || | ||||||||| Sbjct 379 CTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTA 320 Query 165689 GTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACCTCGCTG 165748 ||| |||||||||||||||||||| ||||| |||||||||||||| || ||||| |||| Sbjct 319 ATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTG 260 Query 165749 CTG 165751 ||| Sbjct 259 CTG 257 Score = 556 bits (616), Expect = 1e-153 Identities = 720/989 (73%), Gaps = 4/989 (0%) Strand=Plus/Plus Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250 || |||||||||||||| |||||||| || || | || |||| ||| ||| |||| Sbjct 34893 GACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTTGCC 34952 Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310 | || |||||| | || || || || || || || |||||||| |||||| | ||| Sbjct 34953 GTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTGGCA 35012 Query 166311 AGCAGTTATCTGGAGGG-TGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGC 166369 || ||| |||| || ||||| ||| | || || |||||||| ||||| || || Sbjct 35013 AGTTCCTATTTGGAAGGATGCAA-CTTCTTAACCGCCGCAGTTTCGACTCCTGCTAATAG 35071 Query 166370 TATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTG 166429 | | | || ||| | | | || ||||| ||||| || ||||| ||||| | || Sbjct 35072 TTTAGCCCACTCTTTGTTGTTACTATGGGGCCCTGAAGCACAAGGAGATTTTACTCGTTG 35131 Query 166430 GTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGG 166489 ||| ||| | || || || ||| | ||||||||||||||||||||||| | ||||| || Sbjct 35132 GTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGG 35191 Query 166490 TTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCAA 166548 ||||||| | || || |||||| | ||||| ||| | | | || || || ||||||| Sbjct 35192 TTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAA 35250 Query 166549 TCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTC 166608 |||| || || || || |||||||| || ||| ||| || || || || || || |||| Sbjct 35251 TCGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTC 35310 Query 166609 AATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTT 166668 | || ||||||| || || || ||| || || |||| || || |||||| |||| | Sbjct 35311 AGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTAT 35370 Query 166669 TCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTA 166728 | | ||||| || || || |||||| |||||||||||||||||||||| || || || Sbjct 35371 TTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGGGGG 35430 Query 166729 TTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATC 166788 | | || | ||| |||| | || || ||||||| ||| ||||| || || | | | Sbjct 35431 TATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACCTTATTTG 35490 Query 166789 AAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCT 166848 | ||||| || |||||||| ||| || || || | ||||||| |||||||| | Sbjct 35491 AGGATGGGGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTT 35550 Query 166849 ATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATA 166908 |||||||||| || || ||||||| |||||| || ||||| || |||| ||| |||| Sbjct 35551 ATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATA 35610 Query 166909 AGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCA 166968 | | ||||| |||||||||||| | ||||| || || | ||| | |||| ||| | Sbjct 35611 AACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTC 35670 Query 166969 TCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAA 167028 | || | ||||||| || || ||||| ||||| |||||||| ||||| || ||| | Sbjct 35671 TTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCC 35730 Query 167029 GGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGG 167088 | ||||| || ||||| || ||||| || ||||||||||| || |||||||| || || | Sbjct 35731 GTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACGAAG 35790 Query 167089 GTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAG 167148 |||| ||| |||||||||| || ||||| |||||||| | | |||||||||| | Sbjct 35791 GTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 35850 Query 167149 AGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 ||||||| || | || |||||||| ||| Sbjct 35851 AGGTTCTACCCCGTGGAAACGCTCTTTAA 35879 >seq1 Length=29149675 Score = 192 bits (212), Expect = 7e-44 Identities = 169/211 (80%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 165541 GCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTC 165600 || || ||||||||||| |||||||||||||| ||| | ||| ||||| | ||||| ||| Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTC 9383886 Query 165601 AACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCT 165660 ||| | || |||||||| |||||||| ||| | ||||||||||| | || | Sbjct 9383887 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 9383946 Query 165661 ACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAAC 165720 || |||||||| || | ||||||||| ||| |||||||||||||||||||| ||||| Sbjct 9383947 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 9384006 Query 165721 GCTCACAACTTCCCCCTCGACCTCGCTGCTG 165751 |||||||||||||| || ||||| ||||||| Sbjct 9384007 GCTCACAACTTCCCTCTAGACCTAGCTGCTG 9384037 >seq7 Length=19226500 Score = 102 bits (112), Expect = 9e-17 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 165660 TACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAA 165719 ||| |||||||| || | ||||||||| ||| |||||||||||||||||||| ||||| Sbjct 19048890 TACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAA 19048949 Query 165720 CGCTCACAACTTCCCCCTCGACCTCGCTG 165748 |||||||||||||| || ||||| |||| Sbjct 19048950 TGCTCACAACTTCCCTCTAGACCTAGCTG 19048978 >seq2 Length=23174626 Score = 100 bits (110), Expect = 3e-16 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 164773 TGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCC 164832 ||| | ||| ||| | ||||||||||| | || ||||| |||||| | |||||||| Sbjct 3799821 TGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 3799762 Query 164833 TGTTTGCTCGCCGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGA 164891 || | |||| || | ||| ||||||| || ||||| |||||||| || ||||| Sbjct 3799761 ACCTTATTGACCGCAACT-TCTGTATTTATTATTGTCTTCATTGCTGCTCCTCCAGTGGA 3799703 Query 164892 CATTGATGGTATTCGTGAACCTGT 164915 ||||||||||||||||||||||| Sbjct 3799702 TATTGATGGTATTCGTGAACCTGT 3799679 >seq3 Length=39782674 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 166615 GTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTC 166674 ||||||| || || || ||| || || |||| || || |||||| |||| | | | Sbjct 23202873 GTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTACTTTTCC 23202932 Query 166675 AAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTATTCTCG 166734 |||| || || || |||||| |||||||||||||||||||||| || || || | | | Sbjct 23202933 AAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGGGGGTGTTGG 23202992 Query 166735 GTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACAC 166780 | | ||| ||||| | || || || |||| ||| ||||| || || Sbjct 23202993 GCGTTGCTTTGCTATGCGCTATTCAGGGTGCTACTGTAGAAAATAC 23203038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563659461305600