Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1 109 4e-19 seq2 105 4e-18 seq6 95.1 8e-15 seq5 82.4 5e-11 >seq1 Length=29149675 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||||||||||| | | ||| | ||||| ||| || || |||||||| || |||| Sbjct 6810849 TTCCTCCCCTCAGACGAAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAATCCG 6810908 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 || | | | |||| |||||||| ||||||||||| || | | ||||||||| | | Sbjct 6810909 CCAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGG 6810968 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || |||||||| |||||| || ||| | || | || | ||||| Sbjct 6810969 GAATGCCTTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCAA 6811028 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || | ||| ||||| ||||| |||||||| || ||||| || |||||| Sbjct 6811029 CCTCCAAGGTAATGGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCATA 6811078 Score = 107 bits (118), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || |||||||||||||| || | |||| | | | |||| |||||||| ||||||||||| Sbjct 6810659 TCCTTCTGAATGTTATAATCAGCAAGGGTCCTTCCATCTTCCAGCTGCTTTCCGGCAAAG 6810718 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || ||||||||| | || | ||||||||||| ||| || ||| || || Sbjct 6810719 ATCAATCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGAATTTTTGCTTTCAC--AT 6810776 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| ||| ||| || || | || ||||| |||||||| | ||||| Sbjct 6810777 --TGTCGATTGTATCAGAACTCTCCACCTCCAAAGTGATGGTCTTTCCCGTCAAGGTCTT 6810834 Query 34967 CACAAAGATCTGCAT 34981 ||| ||||||||||| Sbjct 6810835 CACGAAGATCTGCAT 6810849 >seq2 Length=23174626 Score = 105 bits (116), Expect = 4e-18 Identities = 143/197 (73%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| | ||| |||| |||| |||||||| || ||||| || Sbjct 15735243 TTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACCATCCTCCAGCTGCTTACCGGCGAA 15735302 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| |||| | || |||||||| |||||| ||||| | Sbjct 15735303 GATGAGACGCTGCTGGTCAGGCGGTATTCCTTCCTTGTCCTGAATCTTTGCCTTGAC--A 15735360 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | ||||||| ||| ||| || |||| |||||||| || || || || || | Sbjct 15735361 T--TATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTCTTCCCGGTAAGCGTTT 15735418 Query 34966 TCACAAAGATCTGCATA 34982 |||| |||||||||||| Sbjct 15735419 TCACGAAGATCTGCATA 15735435 >seq6 Length=29076228 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || | |||| | || | || || || || || |||||||| Sbjct 26767374 TCCTTCTGGATGTTGTAATCGGCAAGGGTACGACCGTCCTCTAGTTGCTTACCGGCAAAG 26767433 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| ||| |||||| | || | ||||||||||| ||||| |||||| Sbjct 26767434 ATAAGTCTTTGTTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTG 26767493 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | |||||| || | ||| ||||| ||||| || | ||||| ||| Sbjct 26767494 TCAATGGTGTCAGAGCTCTCAACCTCTAGGGTGATGGTCTTTCCGGTCAACGTCTTGACA 26767553 Query 34971 AAGATCTGCATA 34982 || ||||||||| Sbjct 26767554 AAAATCTGCATA 26767565 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| |||||||| || | |||| | || | || || || || || |||||||| Sbjct 26767602 TCCTTCTGGATGTTATAATCAGCAAGGGTACGGCCGTCCTCTAGTTGCTTACCGGCAAAG 26767661 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| ||| |||||| | || | ||||||||||| ||||| || || Sbjct 26767662 ATGAGTCTTTGTTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTTGCCTTCAC---- 26767717 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||||| ||| || || || |||| ||| |||||||| ||||| || ||||| Sbjct 26767718 GTTATCGATGGTATCAGAGGATTCGACCTCGAGGGTGATGGTTTTACCCGTCAGGGTCTT 26767777 Query 34967 CACAAAGATCTGCATA 34982 || || || |||||| Sbjct 26767778 AACGAAAATTTGCATA 26767793 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 34747 AATCAT--TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTT 34804 |||||| | |||||||| | ||||||||||||||||| || || || |||||||| Sbjct 9620080 AATCATAGTACCTCCCCTAAGCCTCAAAACCAAGTGAAGGGTTGACTCCTTTTGAATGTT 9620139 Query 34805 ATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTG 34864 ||| || | ||| |||| |||| |||| || || || ||||| |||| || ||||| Sbjct 9620140 ATAATCTGCAAGCGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTG 9620199 Query 34865 GTCTTGCGGCACCCCCTCCTTGTC 34888 ||| | || | || |||||||| Sbjct 9620200 GTCAGGAGGAATACCTTCCTTGTC 9620223 >seq5 Length=28023477 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| ||||| | || |||| | || || ||||| |||||||| || Sbjct 21960158 TTCCTTCTGAATGTTGTAGTCGGCTAGTGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAA 21960099 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || |||||||| | || | || |||||||| ||||| ||||| | Sbjct 21960098 AATCAAACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTTGCCTTGAC--A 21960041 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | ||||| || | ||| || |||| || ||||| || ||||| || || | Sbjct 21960040 T--TGTCGATGGTATCGGAGCTCTCGACTTCGAGAGTGATGGTCTTACCCGTTAGGGTTT 21959983 Query 34966 TCACAAAGATCTGCAT 34981 |||| ||||||||||| Sbjct 21959982 TCACGAAGATCTGCAT 21959967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632848270320