Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq190 610 8e-170 seq1 134 2e-26 >seq190 Length=155293 Score = 610 bits (676), Expect = 8e-170 Identities = 720/972 (74%), Gaps = 2/972 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 274 GGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGATTAGCACGGTTAATA 333 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||||||||| | ||||| ||| ||||| || | | || ||||| || Sbjct 334 ATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGATTGGTTGAAATTG 393 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| | || || ||||| ||||||| ||| | ||| | |||| || || || Sbjct 394 AAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCGGTGGACCAGATACCTACT 453 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||| | ||| || || | ||||||| |||||||| |||||| ||| Sbjct 454 ACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGG 513 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || |||||||| || |||||||||||||| || |||||| Sbjct 514 AAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGA 573 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| ||||||| | || || |||||||||| ||||| | ||| | |||| Sbjct 574 CCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAACTTAGAA 633 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| |||||| | || |||||||||||||| || || Sbjct 634 GTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCT 693 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 |||||||| || || |||||||||||||| || || |||||||| |||| |||| ||||| Sbjct 694 AACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 753 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || ||||| || || ||||| || ||||| || ||||| || | || || Sbjct 754 AAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGGTAA 813 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||||| || |||||||| ||||| || || |||||| ||||| ||| Sbjct 814 ATCAAGAAAACAGCAGTAGCTGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGA 873 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| ||||| | ||||||||| || |||||||||||| | |||||| Sbjct 874 CGCATACCCAGACGGAAACTAAGTTCCCACTCTCGACCCATGTAACATGCTACACCAAGT 933 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | |||||| | |||| || | |||||| ||||| || |||| |||||| || | Sbjct 934 AAGAAGTGTAGAACAATTAGCTCATAAGGACCACCGTTGTATAACCATTCATCAACGGAA 993 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || ||||||||||| || || || || | ||| ||||| ||||| || | | ||| Sbjct 994 GCAGCTTCCCAAATTGGGTAAAAGTGCAAACCGATAGCTGCAGAGGTAGGGATAATAGCA 1053 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 |||||||| || ||||||||||| | ||||| |||| || || ||||| ||||| ||| Sbjct 1054 CCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCA 1113 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAG 84883 ||||| ||||| || ||| ||| ||| ||||| || || ||||| ||| || | | || Sbjct 1114 ATATCCACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGA-AGTTGCGGTCAATAA 1172 Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943 || || ||||| | | |||||||| |||| || | |||||| | |||| ||| | Sbjct 1173 GGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTAT 1232 Query 84944 CCAATCACAGAA 84955 ||| | |||||| Sbjct 1233 CCAGTTACAGAA 1244 >seq1 Length=29149675 Score = 134 bits (148), Expect = 2e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 9384020 GGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGATTAGCACGGTTAATA 9383961 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||||||||| | ||||| ||| ||||| || | | || ||||| || Sbjct 9383960 ATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGATTGGTTGAAATTG 9383901 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| | || || ||||| | ||||| ||||| ||| | ||||| || || || Sbjct 9383900 AAACCATTTAAGTTGAAAGCCATAGGGCTAATACCCAAAGCGGTGAACCAGATACCTACT 9383841 Query 84165 ACTGGCCAAGCAGC 84178 || ||||||||||| Sbjct 9383840 ACAGGCCAAGCAGC 9383827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571272243225200