Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3 223 4e-53 seq6 120 3e-22 >seq3 Length=39782674 Score = 223 bits (246), Expect = 4e-53 Identities = 580/878 (66%), Gaps = 21/878 (2%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||||||||| |||||||||| |||||||||||||| || || | || || || | Sbjct 22913702 TTTTGATATTCCCCAACTCTTTTCTCAAAGAAATTAGTCTTCCCTTGCAAGGAAATCAAC 22913643 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| ||||||||||||||| ||||| || ||||| | | || ||| || | Sbjct 22913642 TCCATCCAATCAAATGGATTTTGCACATTGTAGATTTTGTCATACCCCAATGCTCCAACC 22913583 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 | |||||| || ||||||| ||| ||| | |||| | || | ||||||||| | || Sbjct 22913582 AATCTATCTGCCACAAATTCAATGTATTGGCTCATAAGGTCTCCATTCATTCCAACTAGA 22913523 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 || || | ||||| || ||||| |||||||| || ||||| | ||| Sbjct 22913522 GCCACCGGCAAAGCATCACAAACGAATTCCCTCTCTATATTCACAGCCTCCATAACAATC 22913463 Query 18910 GATACAACTCTATC----TTCATTAGGAGGGTATAGAA-GATGTTTAAACATCAAACATG 18964 |||| ||| |||| | | | || || | ||| |||||||| Sbjct 22913462 TCCTTCACTCGATCCACATTCAATTTCTTCCTCAACAACGA-----ATACAACAAACATG 22913408 Query 18965 CAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAG 19024 ||||||||||||| || || || ||||| ||||| || || || ||||||| |||| Sbjct 22913407 CAAAATCACAATGAAGACCTTCATCTCTTGAAATCAACTCGTTTGAGAATGTTAGTCCAG 22913348 Query 19025 GCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATAC 19084 |||| | || | |||||| |||||||| |||||| || || || ||||| || | Sbjct 22913347 GCATTAACCCACGTTTTTTCAACCAGAAAATAGAACAGAAACTACCTGAGAAGAAAATTC 22913288 Query 19085 CTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCC 19144 | || || ||||| || | | | || || | | || | | | ||||| Sbjct 22913287 CCTCAACACAAGCAAATGCCAAAATCCGCTCAGCAAA---TGACTCCGTGCTGTCAATCC 22913231 Query 19145 ATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 | |||| |||||||| |||||||| || ||||| || | || || |||| || ||| | Sbjct 22913230 ACTTCAACGCCCAATCGGCCTTCTTCTTGACACAGGGGACAGTATCAATAGCATGAAACA 22913171 Query 19205 ---GATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTT 19261 ||| | | ||||| | |||||| | || | || | | | ||| ||||| | Sbjct 22913170 AGCGATTCTT---CTCATTCGAATCTTTGATGTAAGTTTCGAGGAGAAGACTATACATCT 22913114 Query 19262 CTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCT 19321 | |||||||| || || ||||| || || || ||||| || ||| |||| | | | Sbjct 22913113 CGGAATGAATGTTCTCGATAGCAATTTGGAAACCGTAGAAGGCTCTGACTTCAGCGACTT 22913054 Query 19322 GTACTTCACTACA-AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCA 19380 | ||||| || || || | || | | || || || || |||||| || || Sbjct 22913053 GAACTTC-CTTCATGAACCGACCGGCAAGGTTCTCCAAGACGATACCATCAGAGGCAGCG 22912995 Query 19381 AAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCA 19440 || || || | || || | || ||||| || || || || ||||| | || ||||| Sbjct 22912994 AAGAAGGCAAGGACGTGAGTGATGAAATGCTTCTCGTCGGAAGTTAAGGAATCCCAATGG 22912935 Query 19441 TTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTA 19500 | | |||| ||| | ||| || ||||| | ||||| || || || || || || || Sbjct 22912934 CGAGTGTCTTGAGAGAGATCGACCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCTTCTTG 22912875 Query 19501 TACATGTTCCATATATCACGATATTGTATAGGAAATAT 19538 ||||| | ||| || | ||||||| || || || || Sbjct 22912874 TACATCTCCCAGATTTGGGGATATTGAATGGGGAACAT 22912837 >seq6 Length=29076228 Score = 120 bits (132), Expect = 3e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||||| ||||||| || | || | | ||| || | ||||||| Sbjct 22590411 CCTCCTTGATCAACATATCGAGCAGTATCATTGAATACCCGCAGCATAGGCAAAATACCA 22590352 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| ||||| ||||||||| || | || | ||||| || ||| Sbjct 22590351 TTAGATGTCCCATTTGTTCCACGAATATAACTACCCATGGCACGAATATTGTGGATGGAA 22590292 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| |||||||| ||| || || | ||||||| ||| | ||||||||| ||| Sbjct 22590291 ACACCAATACCACCAGCCGACTTGCTGATAACAGCACACTCTTTTAAGGTATCATATATT 22590232 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 |||||||||||||| || |||| || || ||||| || Sbjct 22590231 CCTTCTATACTATCCTCCTTCATGCATATAAGGAAACAGCT 22590191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562107464991600