Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq190 583 3e-162 seq1 120 9e-23 seq2 96.9 1e-15 seq7 93.3 1e-14 >seq190 Length=155293 Score = 583 bits (646), Expect = 3e-162 Identities = 728/995 (73%), Gaps = 2/995 (0%) Strand=Plus/Plus Query 35964 TCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 36023 ||| |||| |||||||| || ||||||||||| || ||||| ||||||||||||||||| Sbjct 253 TCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATA 312 Query 36024 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 36083 || | | |||||||||| ||| |||||||| || | || | || | |||| Sbjct 313 CCAAGATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCA 372 Query 36084 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 36143 || || || || ||||| || || || || | || |||||||||||| | || | | Sbjct 373 ACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAA 432 Query 36144 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTA 36203 ||||| ||| || | || ||||||||||| ||||||||||||||| || Sbjct 433 GCGGTGGACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAG 492 Query 36204 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 36263 || || || |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 493 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATA 552 Query 36264 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 36323 ||||| || ||||| ||||| |||||| | || || | || ||||||| | || Sbjct 553 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 612 Query 36324 GTTTCACGAAT-AAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCC 36382 ||||| | || || | || | || |||| || ||||||||| ||||| | || Sbjct 613 GTTTCCCTGATCAACTTAGAAGTTACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCC 671 Query 36383 ACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGC 36442 |||||||| || || ||||| | ||| ||||| || ||||||||||| ||||| || || Sbjct 672 GCCGAATACACCAGCTACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGC 731 Query 36443 CTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAA 36502 ||| || |||| ||| || |||||||| || || || || ||||||||||| ||||| || Sbjct 732 CTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAA 791 Query 36503 ACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGA 36562 || ||||| |||| ||||| | ||||| |||||| |||||||||||||| ||||| Sbjct 792 GCTTCCTTGACCAATTGGGTAAATCAAGAAAACAGCAGTAGCTGCTGCAACAGGAGCTGA 851 Query 36563 ATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCC 36622 ||| || ||| ||||| || | |||||| || | ||||||||||||| | ||| || Sbjct 852 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCTCGACC 911 Query 36623 CAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTT 36682 || |||| || | ||||| | ||||| | ||||| || | ||| || || ||||| Sbjct 912 CATGTAACATGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCGTT 971 Query 36683 ATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC 36742 |||||||| || || | || ||||||||||| |||||||| ||||| | |||||| || Sbjct 972 GTATAACCATTCATCAACGGAAGCAGCTTCCCAAATTGGGTAAAAGTGCAAACCGATAGC 1031 Query 36743 GTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGA 36802 || | |||| || || ||||| || || |||||||| || |||| | ||| || Sbjct 1032 TGCAGAGGTAGGGATAATAGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGA 1091 Query 36803 GACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAA 36862 ||||| |||||||||||||| |||||||| ||||| ||||||| || ||||| | ||| Sbjct 1092 AACAGGTTCACGAATACCATCAATATCCACTGGAGGAGCAGCAATGAAGGCAATAATAAA 1151 Query 36863 TGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAG 36922 | | | ||| || || | | ||||||||| | || |||||||| || | || || Sbjct 1152 TACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAG 1211 Query 36923 GCGGTTGTTTGTACTTGTAACCCAGTCACATAAAC 36957 ||||| | || || || | ||||| ||| |||| Sbjct 1212 ACGGTTTTCAGTGCTGGTTATCCAGTTACAGAAAC 1246 >seq1 Length=29149675 Score = 120 bits (132), Expect = 9e-23 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 35968 CAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 36027 |||| |||||||| || ||||||||||| || ||||| ||||||||||||||||| || | Sbjct 9384037 CAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAA 9383978 Query 36028 AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGA 36087 | |||||||||| ||| |||||||| || | || | || | |||||| | Sbjct 9383977 GATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTA 9383918 Query 36088 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGG 36147 | || || ||||| || || || || | || |||||||||| | | |||| ||||| Sbjct 9383917 CAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGGGCTAATACCCAAAGCGG 9383858 Query 36148 TAAGCCATATGCAAGTGACGGGCCAAGCAGC 36178 | | ||| || | || ||||||||||| Sbjct 9383857 TGAACCAGATACCTACTACAGGCCAAGCAGC 9383827 >seq2 Length=23174626 Score = 96.9 bits (106), Expect = 1e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 36797 TCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAAT 36856 ||| || ||||| |||||||||||||| |||||||| ||||| ||||||| || |||| Sbjct 3799672 TCCAGAAACAGGTTCACGAATACCATCAATATCCACTGGAGGAGCAGCAATGAAGACAAT 3799731 Query 36857 TAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCAC 36916 | |||| | | ||| || || | | ||||||||| | || |||||||| || | Sbjct 3799732 AATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 3799791 Query 36917 ATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAAAC 36957 || || ||||| | || || || | ||||| ||| |||| Sbjct 3799792 GTAAAGACGGTTTTCAGTGCTAGTTATCCAGTTACAGAAAC 3799832 >seq7 Length=19226500 Score = 93.3 bits (102), Expect = 1e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 35973 GCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 36032 |||||||| || ||||||||||| || ||||| ||||||||||||||||| || | | Sbjct 19048976 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 19048917 Query 36033 GCACGGTTAAGAATGTCAGCCCAAGT 36058 |||||||||| ||| |||||||| || Sbjct 19048916 GCACGGTTAATAATATCAGCCCAGGT 19048891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150454060537260