Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq190 567 2e-157 seq1 123 8e-24 seq2 100 9e-17 seq7 93.3 1e-14 >seq190 Length=155293 Score = 567 bits (628), Expect = 2e-157 Identities = 723/993 (73%), Gaps = 2/993 (0%) Strand=Plus/Plus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| |||| ||||| || || ||||||||||||||||| ||||| ||||| ||||||||| Sbjct 253 TCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATA 312 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCA 5305 ||||| || |||||||| | | ||| ||||| || || | | ||| | ||| Sbjct 313 CCAAGATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCA 372 Query 5306 ACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATA 5365 || || || || ||||| || || || || | || |||||||||||| || || | | Sbjct 373 ACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAA 432 Query 5366 GAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTA 5425 | ||| ||| || | || || ||||||| ||| ||||||||||||||| ||| Sbjct 433 GCGGTGGACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAG 492 Query 5426 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 5485 ||||| || |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 493 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATA 552 Query 5486 TTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTT 5545 ||||| |||||||||||||| |||||| | || || | || ||| | | || Sbjct 553 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 612 Query 5546 GTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCA 5605 ||||| | || | | |||||| || | |||||||||||| ||| | | || Sbjct 613 GTTTCCCTGATCAACTTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCG 672 Query 5606 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCC 5665 |||||||| ||||| ||||| | ||||||||| || ||||||||||| ||||| || ||| Sbjct 673 CCGAATACACCAGCTACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCC 732 Query 5666 TGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAA 5725 |||||||| | ||| ||||| |||||||||||||| || ||||||||||| ||| || Sbjct 733 TGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAG 792 Query 5726 CTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGA 5784 ||||| || || | ||||| | || || || | |||| ||||| ||||| || ||||| Sbjct 793 CTTCCTTGACCAATTGGGTAAATCAAGAAAACAGCAGTA-GCTGCTGCAACAGGAGCTGA 851 Query 5785 ATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCC 5844 |||||| || |||||| || ||||| || | | | ||||||||||||| | || || Sbjct 852 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCTCGACC 911 Query 5845 CAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATT 5904 || |||| ||| | ||||| | |||||| | || | || | || || || || || Sbjct 912 CATGTAACATGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCGTT 971 Query 5905 GTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGC 5964 ||| | ||||||||| | || |||||||| || || || ||||| || || || || Sbjct 972 GTATAACCATTCATCAACGGAAGCAGCTTCCCAAATTGGGTAAAAGTGCAAACCGATAGC 1031 Query 5965 GTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGC 6024 ||| | || | || || || || || || |||||||| || ||||||||||| | Sbjct 1032 TGCAGAGGTAGGGATAATAGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGA 1091 Query 6025 GACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAA 6084 || |||||||| || || || || || ||||| || ||||| | ||| || | ||||| Sbjct 1092 AACAGGTTCACGAATACCATCAATATCCACTGGAGGAGCAGCAATGAAGGCAATAATAAA 1151 Query 6085 TGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAG 6144 | ||| ||||||||| || | | || ||||| || ||||||||||| || | || || Sbjct 1152 TACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAG 1211 Query 6145 GCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 ||||| | ||||| || | ||||| |||||| Sbjct 1212 ACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 1244 >seq1 Length=29149675 Score = 123 bits (136), Expect = 8e-24 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 5190 CAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAA 5249 |||| ||||| || || ||||||||||||||||| ||||| ||||| ||||||||||||| Sbjct 9384037 CAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAA 9383978 Query 5250 GGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGA 5309 | || |||||||| | | ||| ||||| || || | | ||| | ||||| | Sbjct 9383977 GATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTA 9383918 Query 5310 CTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGG 5369 | || || ||||| || || || || | || |||||||||| | || |||| || || Sbjct 9383917 CAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGGGCTAATACCCAAAGCGG 9383858 Query 5370 TAAGCCATATGCAAACGACGGGCCAAGTAGC 5400 | | ||| || | || || ||||||| ||| Sbjct 9383857 TGAACCAGATACCTACTACAGGCCAAGCAGC 9383827 >seq2 Length=23174626 Score = 100 bits (110), Expect = 9e-17 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 6015 GAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATG 6074 || |||| | || |||||||| || || || || || ||||| || ||||| | ||| Sbjct 3799668 GATATCCAGAAACAGGTTCACGAATACCATCAATATCCACTGGAGGAGCAGCAATGAAGA 3799727 Query 6075 CTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACC 6134 | | |||||| ||| ||||||||| || | | || ||||| || ||||||||||| | Sbjct 3799728 CAATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATC 3799787 Query 6135 CCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 | | || || ||||| | |||||||| | ||||| |||||| Sbjct 3799788 CAATGTAAAGACGGTTTTCAGTGCTAGTTATCCAGTTACAGAA 3799830 >seq7 Length=19226500 Score = 93.3 bits (102), Expect = 1e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 ||||| || || ||||||||||||||||| ||||| ||||| |||||||||||||| || Sbjct 19048976 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 19048917 Query 5255 GCACGGTTCAGGACATCTGCCCAAGT 5280 |||||||| | | ||| ||||| || Sbjct 19048916 GCACGGTTAATAATATCAGCCCAGGT 19048891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152649255584340