Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq190 571 2e-158 seq1 114 4e-21 seq2 96.9 1e-15 seq7 93.3 1e-14 >seq190 Length=155293 Score = 571 bits (632), Expect = 2e-158 Identities = 725/995 (73%), Gaps = 2/995 (0%) Strand=Plus/Plus Query 25444 TCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 25503 ||| ||| |||| ||| |||||||||||||| || ||||| ||||||||||||||||| Sbjct 253 TCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATA 312 Query 25504 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 25563 || | | |||||||||| ||| |||||||| || | || | || | |||| Sbjct 313 CCAAGATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCA 372 Query 25564 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 25623 || || || || ||||| || || || || | || |||||||||||| | || | | Sbjct 373 ACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAA 432 Query 25624 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTA 25683 ||||| ||| || | || ||||||||||| ||||||||||||||| ||| Sbjct 433 GCGGTGGACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAG 492 Query 25684 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 25743 || || || |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 493 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATA 552 Query 25744 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 25803 ||||| || ||||| ||||| |||||| | || || | || ||||||| | || Sbjct 553 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 612 Query 25804 GTTTCACGAAT-AAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCC 25862 ||||| | || || | || | || |||| || ||||||||| ||||| | || Sbjct 613 GTTTCCCTGATCAACTTAGAAGTTACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCC 671 Query 25863 ACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGC 25922 |||||||| || || ||||| | ||| ||||| || ||||||||||| ||||| || || Sbjct 672 GCCGAATACACCAGCTACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGC 731 Query 25923 CTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAA 25982 ||| || |||| ||| || |||||||| || || || || ||||||||||| ||||| || Sbjct 732 CTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAA 791 Query 25983 ACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGA 26042 || ||||| |||| ||||| | ||||| |||||| |||||||||||||| ||||| Sbjct 792 GCTTCCTTGACCAATTGGGTAAATCAAGAAAACAGCAGTAGCTGCTGCAACAGGAGCTGA 851 Query 26043 ATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCC 26102 ||| || ||| ||||| || | ||| || || | ||||||||||||| | ||| || Sbjct 852 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCTCGACC 911 Query 26103 CAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTT 26162 || |||| || | || | | ||||| | ||||| || | ||| || |||||||| Sbjct 912 CATGTAACATGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCGTT 971 Query 26163 ATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC 26222 || ||||| || || | || ||||||||||| |||||||| ||||| | |||||| || Sbjct 972 GTATAACCATTCATCAACGGAAGCAGCTTCCCAAATTGGGTAAAAGTGCAAACCGATAGC 1031 Query 26223 GTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGA 26282 ||| | |||| || || || || || || |||||||| || |||| | ||| || Sbjct 1032 TGCAGAGGTAGGGATAATAGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGA 1091 Query 26283 GACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAA 26342 ||||| |||||||||||||| |||||||| ||||| ||||||| || ||||| | ||| Sbjct 1092 AACAGGTTCACGAATACCATCAATATCCACTGGAGGAGCAGCAATGAAGGCAATAATAAA 1151 Query 26343 TGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAG 26402 | | | ||| || || | | ||||||||| | || |||||||| || | || || Sbjct 1152 TACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAG 1211 Query 26403 GCGGTTGTTTGTACTTGTAACCCAGTCACATAAAC 26437 ||||| | || || || | ||||| ||| |||| Sbjct 1212 ACGGTTTTCAGTGCTGGTTATCCAGTTACAGAAAC 1246 >seq1 Length=29149675 Score = 114 bits (126), Expect = 4e-21 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| |||||||||||||| || ||||| ||||||||||||||||| || | | Sbjct 9384032 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 9383973 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||||| ||| |||||||| || | || | || | |||||| || || Sbjct 9383972 GCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 9383913 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || | || |||||||||| | | |||| |||||| | | Sbjct 9383912 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGGGCTAATACCCAAAGCGGTGAAC 9383853 Query 25633 CATATGCAAGTGACGGGCCAAGCAGC 25658 || || | || ||||||||||| Sbjct 9383852 CAGATACCTACTACAGGCCAAGCAGC 9383827 >seq2 Length=23174626 Score = 96.9 bits (106), Expect = 1e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 26277 TCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAAT 26336 ||| || ||||| |||||||||||||| |||||||| ||||| ||||||| || |||| Sbjct 3799672 TCCAGAAACAGGTTCACGAATACCATCAATATCCACTGGAGGAGCAGCAATGAAGACAAT 3799731 Query 26337 TAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCAC 26396 | |||| | | ||| || || | | ||||||||| | || |||||||| || | Sbjct 3799732 AATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 3799791 Query 26397 ATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAAAC 26437 || || ||||| | || || || | ||||| ||| |||| Sbjct 3799792 GTAAAGACGGTTTTCAGTGCTAGTTATCCAGTTACAGAAAC 3799832 >seq7 Length=19226500 Score = 93.3 bits (102), Expect = 1e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| |||||||||||||| || ||||| ||||||||||||||||| || | | Sbjct 19048976 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 19048917 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGT 25538 |||||||||| ||| |||||||| || Sbjct 19048916 GCACGGTTAATAATATCAGCCCAGGT 19048891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151993257064440