Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq3 114 2e-20 >seq3 Length=39782674 Score = 114 bits (126), Expect = 2e-20 Identities = 292/443 (66%), Gaps = 5/443 (1%) Strand=Plus/Minus Query 37168 ACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAA 37227 |||| |||||||||||||||||||| | |||||||||||| ||||| || || || | Sbjct 22913419 ACAACAAACATGCAAAATCACAATGAAGACCTTCATCTCTTGAAATCAACTCGTTTGAGA 22913360 Query 37228 AGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAG 37287 | |||| ||| |||||||| || | |||||| | ||| || || | ||| || | Sbjct 22913359 ATGTTAGTCCAGGCATTAACCCACGTTTTTTCAACCAGAAAATAGAACAGAAACTACCTG 22913300 Query 37288 AAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTAT 37347 | |||||||| || ||||| |||||||| | || || | | || | ||| Sbjct 22913299 AGAAGAAAATTCCCTCAACACAAGCAAATGCCAAAATCCGCTCAGCAAATG----ACTCC 22913244 Query 37348 AATCAG-AAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCA 37406 | | |||||| || | |||||| ||||| || ||||| | || ||| Sbjct 22913243 GTGCTGTCAATCCACTTCAACGCCCAATCGGCCTTCTTCTTGACACAGGGGACAGTATCA 22913184 Query 37407 ATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAA 37466 || || | || | || || || | |||| | || ||||| || | || | | Sbjct 22913183 ATAGCATGAAACAAGCGATTCTTCTCATTCGAATCTTTGATGTAAGTTTCGAGGAGAAGA 22913124 Query 37467 CTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCT 37526 |||||||| || || ||||| || || ||||| || || ||||| || || || || Sbjct 22913123 CTATACATCTCGGAATGAATGTTCTCGATAGCAATTTGGAAACCGTAGAAGGCTCTGACT 22913064 Query 37527 TCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCA 37586 |||| | |||||| || || | |||| || | ||| || || || |||||| Sbjct 22913063 TCAGCGACTTGAACTTCCTTCATGAACCGACCGGCAAGGTTCTCCAAGACGATACCATCA 22913004 Query 37587 CTAGCTGCAAAGAAAGCAAGAAC 37609 || || ||||| ||||| || Sbjct 22913003 GAGGCAGCGAAGAAGGCAAGGAC 22912981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592315393247600