Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq3 174 1e-38 seq1 129 5e-25 seq5 114 1e-20 seq6 93.3 3e-14 >seq3 Length=39782674 Score = 174 bits (192), Expect = 1e-38 Identities = 164/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| || |||||||| || || |||||||||||||| | |||| | | || || Sbjct 19995620 ACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTCA 19995561 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||||||| ||||| || | | |||||| ||||| |||||||| |||||||||||| Sbjct 19995560 AGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCTTGA 19995501 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 |||||| |||||| | || | || ||||| ||||||| || || |||| |||||| Sbjct 19995500 ATTTTTGCCTTTACATTGTCAATTGTATCAGAGCTTTCCACCTCGAGGGTGATTGTTTTG 19995441 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||||||||| ||||| ||||| Sbjct 19995440 CCAGTGAGAGTTTTTACGAATATTTGCAT 19995412 Score = 138 bits (152), Expect = 9e-28 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| ||||| || |||||||| || || |||||||| || |||| ||||| | Sbjct 19995855 ACGAAGAACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCAGCGAGAGTTCGACC 19995796 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | |||||||| ||||| || | | |||||| || || || || ||||| || Sbjct 19995795 ATCCTCGAGCTGCTTACCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGTATACCTTCCTT 19995736 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||||||||| || ||| | || | || ||||| ||||||| ||||| || | Sbjct 19995735 GTCTTGAATTTTAGCCTTGACATTGTCAATGGTATCAGAACTTTCCACCTCAAGGGTAAT 19995676 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| || | || || |||||||| ||||| Sbjct 19995675 GGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 19995640 Score = 118 bits (130), Expect = 8e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || ||||| || ||||||||||| || | || | |||| |||||||| Sbjct 19996298 TGGAGTGTGGACTCTTTCTGGATATTGTAATCAGCCAATGTCCGACCATCCTCCAATTGT 19996239 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| | ||||||||| || ||||| || ||||| |||||||| || Sbjct 19996238 TTTCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGAATCCCCTCTTTGTCTTGAATCTTC 19996179 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| || |||| ||||| | |||| || || || ||| Sbjct 19996178 GCCTTCACATTGTCAATGGTGTCCGAACTTTCGACTTCCAATGTGATTGTCTTCCCTGTT 19996119 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || || || |||||||| Sbjct 19996118 AATGTCTTCACGAAAATCTGCAT 19996096 >seq1 Length=29149675 Score = 129 bits (142), Expect = 5e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || ||||| || || |||||||||||||| | |||| | | || || | |||| Sbjct 6811462 TGGAGAGTTGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGTTGC 6811521 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || ||||| || || || || || || || ||||| ||||| || || || Sbjct 6811522 TTTCCAGCGAAGATCAATCGTTGCTGGTCCGGGGGGATTCCTTCCTTATCCTGGATCTTG 6811581 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| || | || | ||||||||| | ||||| ||||| |||| || || ||||| Sbjct 6811582 GCTTTAACGTTGTCAATAGTGTCAGAAGACTCCACCTCAAGGGTGATTGTCTTTCCGGTA 6811641 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | ||||||||||| ||||||||| Sbjct 6811642 AGGGTTTTTACAAAGATCTGCATG 6811665 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| || | ||| | ||| | |||||||| || || ||||| || |||||||| | Sbjct 6810849 TTCCTCCCCTCAGACGAAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAATCCG 6810908 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||| || |||| |||| ||||| || ||||| ||||| | ||| || || || | Sbjct 6810909 CCAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGG 6810968 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||||||||| || || ||||| || || || | || | ||||| || | || | Sbjct 6810969 GAATGCCTTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCAA 6811028 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | || | || || ||||| | |||||| ||||| || ||||| Sbjct 6811029 CCTCCAAGGTAATGGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 6811077 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| || ||||| || || || ||||||||||| | |||| |||| ||||| || Sbjct 6811233 ATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCAAGTGTTCGTCCATCTTCCAACTG 6811292 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || |||| | || || || || ||||| ||||| ||||| || || || Sbjct 6811293 CTTTCCGGCGAAGATCAGTCTTTGCTGGTCTGGGGGAATACCTTCCTTATCCTGGATCTT 6811352 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || | || | || || || | ||||| || || |||| || || ||||| Sbjct 6811353 GGCCTTGACGTTATCAATGGTATCGGAGGACTCCACCTCGAGGGTGATAGTCTTTCCGGT 6811412 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | ||| || ||||| || |||||| Sbjct 6811413 AAGAGTCTTGACAAAGATTTGCATG 6811437 >seq5 Length=28023477 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | ||| | || | || || || ||||| || || || ||||| ||||| Sbjct 21960193 CCTCCTCTGAGACGGAGCACAAGGTGGAGCGTGGATTCCTTCTGAATGTTGTAGTCGGCT 21960134 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||| | | || || | ||||| || || || ||||||||||| || || || || Sbjct 21960133 AGTGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCCGGAGGG 21960074 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || || || ||| || ||| | || | || || || | || ||| Sbjct 21960073 ATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTATCGGAGCTCTCGACT 21960014 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 || ||||||| || || || |||| ||||| || || |||||||||||| Sbjct 21960013 TCGAGAGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATGGTT 21959963 >seq6 Length=29076228 Score = 93.3 bits (102), Expect = 3e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 ||||| || |||||||| || || ||||| || || ||||| || | |||| |||| Sbjct 9620105 AAAACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAATCTGCAAGCGTTCGACCATCT 9620164 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||||||||||||| ||||| || || | ||| || || || ||||| ||||| || || Sbjct 9620165 TCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGAGGAATACCTTCCTTGTCC 9620224 Query 101378 TGAATT 101383 || ||| Sbjct 9620225 TGCATT 9620230 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || | || ||||| || || || || || ||||||||||| | || | | Sbjct 26767349 ACGCAACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCAAGGGTACGACC 26767408 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || || | ||||||||| ||||| || | | ||||| || || ||||| || || || Sbjct 26767409 GTCCTCTAGTTGCTTACCGGCAAAGATAAGTCTTTGTTGGTCTGGGGGAATTCCCTCCTT 26767468 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || || || || || || | || | |||||||| | || || || || |||| Sbjct 26767469 GTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCAACCTCTAGGGTGAT 26767528 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || ||||| || || || ||||| |||||||| Sbjct 26767529 GGTCTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 26767564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396277482367830