Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 3e-15 seq1 95.1 9e-15 seq2 93.3 3e-14 seq3 87.8 1e-12 >seq6 Length=29076228 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||| | || || ||| ||| || || || |||||||| | || | ||| Sbjct 26767347 AGACGCAACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCAAGGGTACGA 26767406 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||||||||||| || |||| ||||| || | ||||| |||||| Sbjct 26767407 CCGTCCTCTAGTTGCTTACCGGCAAAGATAAGTCTTTGTTGGTCTGGGGGAATTCCCTCC 26767466 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || ||| ||||| | || Sbjct 26767467 TTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCAACCTCTAGGGTG 26767526 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| ||||| || || |||||||||||||| Sbjct 26767527 ATGGTCTTTCCGGTCAACGTCTTGACAAAAATCTGCAT 26767564 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||| | || || ||| ||| || || || || ||||||| || | || Sbjct 26767575 AGACGCAACACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCAAGGGTACGG 26767634 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||||||||||| || |||| ||||| || | ||||| |||||| Sbjct 26767635 CCGTCCTCTAGTTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGGGAATTCCCTCC 26767694 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || | | | | || || | || ||||| | || Sbjct 26767695 TTGTCCTGGATCTTTGCCTTCACGTTATCGATGGTATCAGAGGATTCGACCTCGAGGGTG 26767754 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| ||||||| || || || ||||| ||||| Sbjct 26767755 ATGGTTTTACCCGTCAGGGTCTTAACGAAAATTTGCAT 26767792 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || ||||| |||||||||| ||| | | | || || | |||| Sbjct 26766906 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTCCCATCTTCAAGCTGC 26766965 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || || || |||| | ||| || |||| || | ||| |||||||| ||| || Sbjct 26766966 TTCCCAGCGAAGATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGAATTTTA 26767025 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 ||| ||| | | | | || || ||||||||||| || || || ||||| ||| Sbjct 26767026 GCTTTCACATTATCGATCGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTTCCAGTC 26767085 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || |||||||| ||||| Sbjct 26767086 AGGGTCTTAACAAAAATTTGCAT 26767108 >seq1 Length=29149675 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| || ||||||| || | | | || |||| |||||| |||||||| Sbjct 6810658 CTCCTTCTGAATGTTATAATCAGCAAGGGTCCTTCCATCTTCCAGCTGCTTTCCGGCAAA 6810717 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| || ||| || || | |||| ||||||||||| ||| ||| ||| ||| Sbjct 6810718 GATCAATCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGAATTTTTGCTTTCACATT 6810777 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||||||||||| || || || ||||||||||| || || || Sbjct 6810778 GTCGATTGTATCAGAACTCTCCACCTCCAAAGTGATGGTCTTTCCCGTCAAGGTCTTCAC 6810837 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 6810838 GAAGATCTGCAT 6810849 >seq2 Length=23174626 Score = 93.3 bits (102), Expect = 3e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 9076 ATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCG 9135 |||| ||| ||| | ||||| |||||||| ||| ||||| |||| || ||| Sbjct 17255724 ATTTTCTCAAGAATCATCTGAGCGATCCTGTCGCCCGCTTTCACCTCAAAATCCACATCG 17255665 Query 9136 GAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCA 9195 || ||||||||||| | ||||||||| || |||||||| |||| || ||||||||| Sbjct 17255664 GAGTGATTGAACAGTATCACTCCCACCGGGCCTCTGTAATCAGCATCAATAACACCAGCA 17255605 Query 9196 CCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGC 9239 || || ||||| ||||| | || | ||||| || ||||| Sbjct 17255604 CCAACATCGATCGCATGCTTCAAAGCCAAACCAGAACGAGGCGC 17255561 >seq3 Length=39782674 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 ||||||||| || || || || || ||||||||||| | || |||| |||| || Sbjct 19995621 CACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTC 19995562 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 | |||||||| ||||| || || | |||||| || | |||| |||||| || || Sbjct 19995561 AAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCTTG 19995502 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||| ||| |||||| | | | || || |||||||| | || || ||||| Sbjct 19995501 AATTTTTGCCTTTACATTGTCAATTGTATCAGAGCTTTCCACCTCGAGGGTGATTGTTTT 19995442 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || | ||||||||| || || |||||| Sbjct 19995441 GCCAGTGAGAGTTTTTACGAATATTTGCATC 19995411 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| |||||| || ||||||||||||| | | ||| | || ||||| || Sbjct 19996298 TGGAGTGTGGACTCTTTCTGGATATTGTAATCAGCCAATGTCCGACCATCCTCCAATTGT 19996239 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| ||||||| ||||||||| | |||| ||||| ||||| |||||| Sbjct 19996238 TTTCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGAATCCCCTCTTTGTCTTGAATCTTC 19996179 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | || || || || |||| || || || || || || Sbjct 19996178 GCCTTCACATTGTCAATGGTGTCCGAACTTTCGACTTCCAATGTGATTGTCTTCCCTGTT 19996119 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||||||||| Sbjct 19996118 AATGTCTTCACGAAAATCTGCAT 19996096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380936717891370