Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq190 600 1e-166 seq1 152 6e-32 seq7 93.3 5e-14 >seq190 Length=155293 Score = 600 bits (664), Expect = 1e-166 Identities = 729/992 (73%), Gaps = 6/992 (1%) Strand=Plus/Minus Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561 ||||||||| | ||| ||| || || | || | || ||||| ||||| |||||| Sbjct 1241 TGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATG 1182 Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCA 162621 |||||| ||| | | ||| | || || || ||||| |||||||| || |||||| Sbjct 1181 ATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCA 1122 Query 162622 GTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATC 162681 || ||||| |||||||| | ||||||||| | || || || || || || ||||| || Sbjct 1121 GTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATT 1062 Query 162682 ATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGG 162741 || ||||||||| | | |||| || ||||| ||| | ||||| || || || ||| Sbjct 1061 ATTTCTGGTGCTATTATCCCTACCTCTGCAGCTATCGGTTTGCACTTTTACCCAATTTGG 1002 Query 162742 GAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTC 162801 ||||| || | ||||||| ||||| || || ||||| |||| | || | || | Sbjct 1001 GAAGCTGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTGTTCTA 942 Query 162802 CACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTA 162861 |||||| | | || | || ||| ||||| ||||||||||| || ||| | Sbjct 941 CACTTCTTACTTGGTGTAGCATGTTACATGGGTCGAGAGTGGGAACTTAGTTTCCGTCTG 882 Query 162862 GGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTG 162921 ||||||||||||||||| ||||||||| || || || || | ||||| ||||| Sbjct 881 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCTACTGCTGTT 822 Query 162922 TTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCT 162981 |||||| | || || | |||||||| || ||||||| |||||||| || || ||| Sbjct 821 TTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCT 762 Query 162982 GGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTC 163041 |||||||| |||| |||| | || ||||| || |||||||||||||| |||||||| ||| Sbjct 761 GGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTC 702 Query 163042 CATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCT 163101 || ||| | || || || ||||||||||| || || || || ||||||||||| ||||| Sbjct 701 CACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCC 642 Query 163102 CTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTAT 163161 | || |||||| | ||||| ||||| || || | || || || | ||||| Sbjct 641 TTGGTAACTTCTAAGTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 582 Query 163162 AAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGC 163221 | ||||| ||||| ||||| ||||| || || || ||||||||||| || ||||| || Sbjct 581 AGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGA 522 Query 163222 TTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCA 163281 ||||||||||| ||||| |||||||||||| ||||| | || |||||||| ||||| Sbjct 521 TTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCT 462 Query 163282 TTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTT 163341 | ||||| || | ||||||| ||| || | ||| | |||||||| |||||| | Sbjct 461 TGGCCTGTAGTAGGTATCTGGTCCACCGCTTTAGGTATTAGCACTATGGCTTTCAACTTA 402 Query 163342 AACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACT 163398 || |||||||| ||||||||||| || ||||| |||| || || ||| ||| Sbjct 401 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGT---GTAATTAATACC 345 Query 163399 TGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCT 163458 ||||| ||||| ||||| | || |||||||||||||||||||| || ||||||||| Sbjct 344 TGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCT 285 Query 163459 CACAACTTCCCACTTGACCTTGCTGCTGCTGA 163490 ||||||||||| || ||||| ||||||| ||| Sbjct 284 CACAACTTCCCTCTAGACCTAGCTGCTGTTGA 253 >seq1 Length=29149675 Score = 152 bits (168), Expect = 6e-32 Identities = 163/214 (76%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 163276 GCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTC 163335 ||||| | ||||| || | ||||||||||| || ||||| | ||||||| ||| Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTC 9383886 Query 163336 AACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGC---AGGTGGTAAAGTGATT 163392 ||| | || |||||||| ||||||||||| || ||||| |||| || || ||| Sbjct 9383887 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGT---GTAATT 9383943 Query 163393 CCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGT 163452 ||| ||||| ||||| ||||| | || |||||||||||||||||||| || ||| Sbjct 9383944 AATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGT 9384003 Query 163453 AATGCTCACAACTTCCCACTTGACCTTGCTGCTG 163486 ||||||||||||||||| || ||||| ||||||| Sbjct 9384004 AATGCTCACAACTTCCCTCTAGACCTAGCTGCTG 9384037 >seq7 Length=19226500 Score = 93.3 bits (102), Expect = 5e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 163395 TACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAA 163454 ||| ||||| ||||| ||||| | || |||||||||||||||||||| || ||||| Sbjct 19048890 TACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAA 19048949 Query 163455 TGCTCACAACTTCCCACTTGACCTTGCTG 163483 ||||||||||||||| || ||||| |||| Sbjct 19048950 TGCTCACAACTTCCCTCTAGACCTAGCTG 19048978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553083486423600