Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq190 545 3e-150 seq1 168 8e-37 seq3 104 3e-17 seq7 84.2 2e-11 >seq190 Length=155293 Score = 545 bits (604), Expect = 3e-150 Identities = 736/1020 (72%), Gaps = 4/1020 (0%) Strand=Plus/Plus Query 164607 TTCGACATCCTAGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGA 164666 ||||| || | ||||||||| | | || || || |||||||| || ||||| || Sbjct 34863 TTCGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 34922 Query 164667 TTACTACTTCTTCCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTT 164726 || | || |||| ||| ||| | ||| | || |||||| |||| || ||| | ||| Sbjct 34923 CTATTGCTCTTTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTT 34982 Query 164727 GTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCT 164785 || || ||||| |||||||| | || ||||||| | ||||| ||| ||||| | Sbjct 34983 GTAACTTCATGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGATGC-AACTTCTT 35041 Query 164786 CACAGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 164845 || || || || ||||| |||||| || | | | || ||| | | |||| ||||| Sbjct 35042 AACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCCCACTCTTTGTTGTTACTATGGGG 35101 Query 164846 TCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGT 164905 ||||| | || || |||| || ||||| ||| | || || || |||| ||| || Sbjct 35102 CCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGT 35161 Query 164906 GGCTCTCCACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACG 164965 |||||||||||||| |||| ||||| ||||||||| | || || ||||| || || || Sbjct 35162 TGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCG 35221 Query 164966 -TCTCATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTG 165024 ||| | | | || ||||| ||||| || || ||||| || || ||||||||||||| Sbjct 35222 ATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCGGGCCCAATTGCTGTTTTTG 35280 Query 165025 TCAGCGTCTTCCTTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTG 165084 | || ||||| || || ||||| |||||||| ||||||| || || || |||| Sbjct 35281 TTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTG 35340 Query 165085 GGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCA 165144 | || ||||| || ||| ||||| | | || | ||||| || || || ||||| | | Sbjct 35341 GTGTAGCAGCTATATTTCGATTCATCCTATTTTTCCAAGGGTTTCATAATTGGACATTGA 35400 Query 165145 ACCCCTTCCATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTC 165204 |||| || ||||||||||| ||||| || | ||||| | || |||||| ||||||| Sbjct 35401 ACCCATTTCATATGATGGGAGTTGCGGGGGTATTGGGCGCTGCTCTGCTATGCGCTATTC 35460 Query 165205 ATGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGG 165264 |||| | || || |||||||| |||| |||||||| || |||||||| || | Sbjct 35461 ATGGTGCTACCGTAGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCCGTG 35520 Query 165265 CGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 165324 | ||| | | || || | ||||| |||||||| ||||||||||| |||||||| |||| Sbjct 35521 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGT 35580 Query 165325 CGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 165384 | || ||||| || |||| ||||| || || || ||| | ||||| || ||||| |||| Sbjct 35581 CCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 35640 Query 165385 TGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTC 165444 | || || | ||| | |||| || |||| | ||||||| || || ||||| | Sbjct 35641 TACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTAC 35700 Query 165445 GTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCT 165504 |||| || || ||||| |||||| ||| | ||||| |||||||| ||||||||||| | Sbjct 35701 GTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTT 35760 Query 165505 TCTACACCAAAAACATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATC 165564 |||| |||||||| || || || || ||||| | ||||||||| |||| || |||| Sbjct 35761 TCTATACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATC 35820 Query 165565 AACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 165624 | || ||||||||| |||| ||||| || || || | || | || ||||| ||||||| Sbjct 35821 AGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAAT 35880 Score = 538 bits (596), Expect = 4e-148 Identities = 723/998 (72%), Gaps = 10/998 (1%) Strand=Plus/Minus Query 162891 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 162950 |||||| | ||| |||| || | ||||| || || | || ||||| || || | Sbjct 1245 TTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 1186 Query 162951 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 163009 |||||| || || | ||| | |||||| ||||| || || | |||||| | ||||||| Sbjct 1185 GATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTC 1127 Query 163010 CCCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACA 163069 | || ||||| ||||| || || ||||| || || |||| || || | || || |||| Sbjct 1126 CTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 1067 Query 163070 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 163129 | || || |||||||| || | || | || || || ||| | ||||| || || | Sbjct 1066 ATATTATTTCTGGTGCTATTATCCCTACCTCTGCAGCTATCGGTTTGCACTTTTACCCAA 1007 Query 163130 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 163189 | |||||||| || || ||||||| ||| | || ||||||||||||| | || | | Sbjct 1006 TTTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTG 947 Query 163190 TCTTTCACTTCCTTATCGGCATCTATGCATAT---ATGGGACGTGAATGGGAACTTTCAT 163246 | | |||||| | | || | || |||| | ||||| || || ||||||||| | Sbjct 946 TTCTACACTTCTTACTTGG--TGTA-GCATGTTACATGGGTCGAGAGTGGGAACTTAGTT 890 Query 163247 ATCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCAT 163306 || | |||||||| || ||||| ||| ||||| || || |||||||||||||| Sbjct 889 TCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCTA 830 Query 163307 CCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTG 163366 | || || ||| || | || || | |||||||| || ||||||| ||||| || | Sbjct 829 CTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAG 770 Query 163367 GCATCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGC 163426 | |||||||| || ||||||| |||| |||| ||||| || |||||||||||||| |||| Sbjct 769 GAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGC 710 Query 163427 ACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGC 163486 |||| ||||| ||||| || || |||||||| ||||| || || || ||| || |||| Sbjct 709 ACCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGC 650 Query 163487 ATGGCAGTCTTGTTACCTCTTCACTCG-TCCGTGAGACGACTGAAACTGAGTCACAAAAC 163545 |||| |||| || || | | | | || | || || || |||| ||| || || Sbjct 649 ATGGTTC-CTTGGTAACTTCTAAGTTGATCAGGGAAACCACAGAAAATGAATCTGCTAAT 591 Query 163546 TATGGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTAC 163605 | ||||||| || |||||||| ||||| || || || ||||| || || ||||| || Sbjct 590 GAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTAT 531 Query 163606 TTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTCACTTCTTC 163665 || || || ||||||||||||||||| ||||||||| | | | || |||||| Sbjct 530 TTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTC 471 Query 163666 CTGGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCA 163725 || || || |||||||| || || ||||||| || || | || | ||||| ||||| Sbjct 470 CTAGCTGCTTGGCCTGTAGTAGGTATCTGGTCCACCGCTTTAGGTATTAGCACTATGGCT 411 Query 163726 TTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTC 163785 |||||| | || |||||||| |||||||| || | ||||| |||| |||||||| | Sbjct 410 TTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATT 351 Query 163786 AACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGT 163845 || || ||||| || | ||||||| ||| ||| |||||||||||||||||||| ||| Sbjct 350 AATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGT 291 Query 163846 AACGCACACAACTTCCCACTCGATCTTGCTGCTGCTGA 163883 || || ||||||||||| || || || ||||||| ||| Sbjct 290 AATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGA 253 >seq1 Length=29149675 Score = 168 bits (186), Expect = 8e-37 Identities = 164/211 (78%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 163669 GCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATTC 163728 || || |||||||| || || |||||||| || || |||| | ||| | ||||| ||| Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTC 9383886 Query 163729 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAAC 163788 ||| | || |||||||| |||||||| || | ||||| |||| |||||||| | || Sbjct 9383887 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 9383946 Query 163789 ACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAAC 163848 || ||||| || | ||||||| ||| ||| |||||||||||||||||||| ||||| Sbjct 9383947 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 9384006 Query 163849 GCACACAACTTCCCACTCGATCTTGCTGCTG 163879 || ||||||||||| || || || ||||||| Sbjct 9384007 GCTCACAACTTCCCTCTAGACCTAGCTGCTG 9384037 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 164063 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 164122 || ||||| || ||||| |||||||| ||| | || | ||| ||||| | || ||| Sbjct 10226992 TATATTCTTGATGCAGCTGAAGAAGCGGGAATAGACTTACCTTATTCTTGCAGGGCAGGT 10227051 Query 164123 GCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCA 164182 || || || | ||||| || ||||| || || || | |||||||| || |||| Sbjct 10227052 GCGTGTTCTACGTGTGCTGGGAAAATAGTTTCGGGTTCGGTTGATCAATCAGACGGGTCA 10227111 Query 164183 TTCCTAGACGATGATCAGATTGCAGCAGGATTCGTGCTTACGTGTGTAGCATATCCAACA 164242 ||||| ||||||||||| || ||| || | | || | || ||| | || ||||| Sbjct 10227112 TTCCTTGACGATGATCAAATGGCAAATGGTTACTTGTTAACCTGTATTTCACTCCCAACT 10227171 Query 164243 TCTGATTGTGT 164253 | |||||||| Sbjct 10227172 GCAGATTGTGT 10227182 >seq3 Length=39782674 Score = 104 bits (114), Expect = 3e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 165055 AGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGT 165114 |||| ||||||| || || || ||||| || ||||| || ||| ||||| | | Sbjct 23202867 AGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTAC 23202926 Query 165115 TCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGTGTTGCAGGTA 165174 | | ||||| || || || ||||| | ||||| || ||||||||||| ||||| || Sbjct 23202927 TTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGGGGG 23202986 Query 165175 TCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTTGAAAATACATTATACG 165234 | ||||| | || ||||||| |||||||| || | || || |||||||| ||| | Sbjct 23202987 TGTTGGGCGTTGCTTTGCTATGCGCTATTCAGGGTGCTACTGTAGAAAATACCTTACTTG 23203046 Query 165235 AGGATGGAGA 165244 ||||||| || Sbjct 23203047 AGGATGGGGA 23203056 >seq7 Length=19226500 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 163786 AACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGT 163845 || || ||||| || | ||||||| ||| ||| |||||||||||||||||||| ||| Sbjct 19048888 AATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGT 19048947 Query 163846 AACGCACACAACTTCCCACTCGATCTTGCTG 163876 || || ||||||||||| || || || |||| Sbjct 19048948 AATGCTCACAACTTCCCTCTAGACCTAGCTG 19048978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563208262377200