Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 2e-14 >seq3 Length=39782674 Score = 95.1 bits (104), Expect = 2e-14 Identities = 187/272 (69%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 |||||||| || || | ||||| ||||| || ||||| ||||||||||| ||| | ||| Sbjct 22913120 TACATCTCGGAATGAATGTTCTCGATAGCAATTTGGAAACCGTAGAAGGCTCTGACTTCA 22913061 Query 48485 AACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGA 48543 || || ||||| | ||| | || || || ||||| ||| || ||||| || Sbjct 22913060 GCGACTTGAACTTCCTTCATGAA-CCGACCGGCAAGGTTCTCCAAGACGATACCATCAGA 22913002 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 ||||| |||||||||||||| || | | |||||| ||||| | || | | || Sbjct 22913001 GGCAGCGAAGAAGGCAAGGACGTGAGTGATGAAATGCTTCTCGTCGGAAGTTAAGGAATC 22912942 Query 48604 CCA--GCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGT 48661 ||| | | || ||||| || || || ||||| | ||||||||||| || Sbjct 22912941 CCAATGGCGAGT--GTCTTGAGAGAGATCGACCTCTTCGGCGGTCCAGAAGGAGGCTTCG 22912884 Query 48662 GCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 || || |||||||| |||| || | ||||| Sbjct 22912883 GCCTTCTTGTACATCTCCCAGATTTGGGGATA 22912852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931530587609600