Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3 113 8e-20 >seq3 Length=39782674 Score = 113 bits (124), Expect = 8e-20 Identities = 296/446 (66%), Gaps = 13/446 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| || ||| |||||||||||||||| | ||||| Sbjct 22912861 ATCTGGGAGATGTACAAGAAGGCCGAAGCCTCCTTCTGGACCGCCGAAGAGGTCGATCTC 22912920 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 | | |||| | ||| | | || | |||||| ||||||| ||| || Sbjct 22912921 TCTCAAGACACTCGCCATTGGGATTCCTTAACTTCCGACGAGAAGCATTTCATCACTCAC 22912980 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || | || ||||| || |||||||||||||| || ||||| || || | ||| Sbjct 22912981 GTCCTTGCCTTCTTCGCTGCCTCTGATGGTATCGTCTTGGAGAACCTTGCCGGTCGGTTC 22913040 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 | | |||||| || || || | || |||||||||||||| || || ||||| Sbjct 22913041 ATGAAGGAAGTTCAAGTCGCTGAAGTCAGAGCCTTCTACGGTTTCCAAATTGCTATCGAG 22913100 Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCG-C 25772 || | || || ||| ||||| | ||||| | || ||||| | ||| ||| Sbjct 22913101 AACATTCATTCCGAGATGTAT---AGTCTTCTCCTCGAAACTTACATCAAAGA-TTCGAA 22913156 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 |||| |||| ||||| ||| || || | ||| | |||||| |||||| Sbjct 22913157 TGAGAAGAATCGCTTGTTTCATGCTATTGATACTGTCCCCTGTGTCAAGAAGAAGGCCGA 22913216 Query 25833 GTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 ||||| |||||||||| ||||| | ||| | |||| |||||| | | || | Sbjct 22913217 TTGGGCGTTGAAGTGGATTGACAGCACGGAG----TCATTTGCTGAGCGGATTTTGGCAT 22913272 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTC 25917 ||||| ||| ||||| || || ||| Sbjct 22913273 TTGCTTGTGTTGAGGGAATTTTCTTC 22913298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928842593993600