Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq190 657 0.0 seq1 132 5e-26 seq3 113 5e-20 >seq190 Length=155293 Score = 657 bits (728), Expect = 0.0 Identities = 718/951 (75%), Gaps = 2/951 (0%) Strand=Plus/Minus Query 8290 GGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTACAATTTGCTTCATTAC 8348 || |||||||| ||| | |||||||| ||| || ||| |||| || | || |||| Sbjct 1202 GGATGGTTTGGTGTTTTGATGATCCCTACC-TTATTGACCGCAACTTCTGTATTTATTAT 1144 Query 8349 CGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATC 8408 || ||| ||||||||||||| ||||| || || || || || ||||| ||| ||||||| Sbjct 1143 TGCCTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 1084 Query 8409 TCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGG 8468 ||| | ||||| ||||| || || |||||||| || | || | |||| || || || Sbjct 1083 TCTACTTTACGGAAACAATATTATTTCTGGTGCTATTATCCCTACCTCTGCAGCTATCGG 1024 Query 8469 CCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGG 8528 | ||||| ||||| || |||||||| ||||| ||||||| ||| | ||||||||||| Sbjct 1023 TTTGCACTTTTACCCAATTTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAACGGTGG 964 Query 8529 TCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGA 8588 |||||| |||| | ||| | |||||| | ||||| || ||| |||||||| || Sbjct 963 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCATGTTACATGGGTCGAGA 904 Query 8589 ATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCC 8648 ||||||||| || ||| || || |||||||||||||| ||||||||| || ||||| Sbjct 903 GTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 844 Query 8649 TGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGA 8708 |||||| || ||| ||||||| ||| | | || || |||||||||| || ||||| Sbjct 843 TGTTGCAGCAGCTACTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGA 784 Query 8709 TGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCA 8768 ||||||||||| || ||||| ||||| ||||||| ||| |||| |||||||||||||| Sbjct 783 CGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCA 724 Query 8769 CAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCT 8828 ||||||||| |||||||| ||||||||| | ||||| |||||||| |||||||| || || Sbjct 723 CAACATCCTTATGCACCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCT 664 Query 8829 CTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAC 8888 || || ||||||||||| | || |||||| | || | | || ||||| |||| Sbjct 663 ATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAAGTTGATCAGGGAAACCACAGAAAA 604 Query 8889 CGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGC 8948 || ||| || | || |||| ||||||||||| || |||||||| || || || || Sbjct 603 TGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGC 544 Query 8949 CGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAG 9008 |||||||| || ||||| || ||||||||||||||||| ||| ||||| ||| | Sbjct 543 TGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTC 484 Query 9009 CTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGT 9068 || ||||||||||| ||||| |||||||| || || ||||||| ||||| | || | Sbjct 483 TTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTCCACCGCTTTAGGTAT 424 Query 9069 CTCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACA 9128 || |||||||||||| | ||||| ||||| |||||||| || | | || | || Sbjct 423 TAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCA 364 Query 9129 AGGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGT 9188 ||| || || | || |||||||| || | ||||||| || || ||||||||||| Sbjct 363 AGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGT 304 Query 9189 CATGCACGAAAGAAACGCACACAACTTCCCGCTTGACCTTGCGGCTGCTGA 9239 ||||| ||| | || || ||||||||||| || ||||| || |||| ||| Sbjct 303 TATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGA 253 Score = 542 bits (600), Expect = 3e-149 Identities = 714/987 (72%), Gaps = 2/987 (0%) Strand=Plus/Plus Query 9827 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGACTACTTCTTTTT 9886 ||||||||| | | || || || |||||||| |||||||| || ||| | || ||| Sbjct 34875 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 34934 Query 9887 CCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTTGTCACGAGTTGG 9946 || ||| ||| |||| | || || ||| |||| || || || ||||| || ||| Sbjct 34935 CCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 34994 Query 9947 TACACTCACGGACTTGCAAGTAGTTACCTTGAGGG-TGCTAATTTCCTTACAGCGGCTGT 10005 || || || ||| | |||||| || | || || ||| || ||| | || || || || Sbjct 34995 TATACCCATGGATTGGCAAGTTCCTATTTGGAAGGATGC-AACTTCTTAACCGCCGCAGT 35053 Query 10006 CTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 10065 || || |||||| || | | | || ||| | | |||| ||||| ||||| | || Sbjct 35054 TTCGACTCCTGCTAATAGTTTAGCCCACTCTTTGTTGTTACTATGGGGCCCTGAAGCACA 35113 Query 10066 GGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGG 10125 |||||||| || ||| || | || || || ||| ||||||| || |||||||| Sbjct 35114 AGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGG 35173 Query 10126 AGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGATTAATTGGAAT 10185 || |||| |||| || || |||||||| || ||||| || || ||| || | | Sbjct 35174 TGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATT 35233 Query 10186 CCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCT 10245 |||||||| ||||| ||||| || || || || |||||||||||||| ||| ||||| Sbjct 35234 GCGACCTTATAATGCAATCGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATTCCT 35293 Query 10246 CATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGAT 10305 || |||||||| || |||||| |||||||||||||||| ||||| || || || || || Sbjct 35294 GATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTAT 35353 Query 10306 TTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATAT 10365 || || ||| | || || |||| || |||||||||||||| | || || || ||||| Sbjct 35354 ATTTCGATTCATCCTATTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATAT 35413 Query 10366 GATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACTGT 10425 |||||||||||| || || |||| | || || |||| || || || || | || || Sbjct 35414 GATGGGAGTTGCGGGGGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGT 35473 Query 10426 AGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCTTTTGATAGCAC 10485 |||||| || | | | | ||||| || ||||| || ||| |||||| | || Sbjct 35474 AGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCCGTGCTTTTAACCCAAC 35533 Query 10486 TCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGG 10545 ||||| ||||| || ||||| ||||| ||||||||||| || |||||||| || ||||| Sbjct 35534 TCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGG 35593 Query 10546 AATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGG 10605 |||||||| ||||||||| ||| | |||||||||||| | |||||||| || | || Sbjct 35594 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGG 35653 Query 10606 TCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTT 10665 | | |||| | || ||||| | ||||||| || || || || ||||| || || || Sbjct 35654 TTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTT 35713 Query 10666 TGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAA 10725 || ||||| || ||| | || | |||||||| ||||||||||| |||||||| || || Sbjct 35714 CGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACCAAAAA 35773 Query 10726 TATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCAACCACACGAAAG 10785 ||| || | ||||||||| ||||||| |||||||| | || || || || |||| Sbjct 35774 TATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 35833 Query 10786 CTTTGTTTTCCCAGAAGAAGTTCTTCC 10812 | || | ||||| || || ||||| || Sbjct 35834 CCTTATATTCCCTGAGGAGGTTCTACC 35860 >seq1 Length=29149675 Score = 132 bits (146), Expect = 5e-26 Identities = 158/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 9025 GCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACC-ATGGCTTT 9083 ||||| |||||||| || || |||||||| ||||| | || | | | || |||||||| Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTAT-TAGCCCTATGGCTTT 9383885 Query 9084 CAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAA 9143 |||| | ||||| ||||| |||||||| || | | || | ||||| || || | || Sbjct 9383886 CAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAA 9383945 Query 9144 CACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAA 9203 |||||||| || | ||||||| || || ||||||||||| ||||| ||| | || Sbjct 9383946 TACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAA 9384005 Query 9204 CGCACACAACTTCCCGCTTGACCTTGCGGCTG 9235 || ||||||||||| || ||||| || |||| Sbjct 9384006 TGCTCACAACTTCCCTCTAGACCTAGCTGCTG 9384037 >seq3 Length=39782674 Score = 113 bits (124), Expect = 5e-20 Identities = 128/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 10263 AGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCT 10322 ||||| |||||||||||||||| ||||| || || || || || || || ||| | || Sbjct 23202867 AGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTAC 23202926 Query 10323 TCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCTGGTA 10382 | |||| || |||||||||||||| | || || || ||||||||||||||||| || Sbjct 23202927 TTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGGGGG 23202986 Query 10383 TACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACTGTAGAAAACAC 10434 | |||| | || | |||| || || || || | ||||||||||| || Sbjct 23202987 TGTTGGGCGTTGCTTTGCTATGCGCTATTCAGGGTGCTACTGTAGAAAATAC 23203038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516478773360000