Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 8e-16 >seq3 Length=39782674 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| || || | || || |||||||||||| || |||| ||| Sbjct 19995640 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATTACCCTTGAGGTGGAAAGTTCT 19995699 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || ||||| ||||| ||||| || || | || || ||| Sbjct 19995700 GATACCATTGACAATGTCAAGGCTAAAATTCAAGACAAGGAAGGTATACCACCTGACCAA 19995759 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||||||||| ||||| || || || | || ||| | |||| | || || || || Sbjct 19995760 CAGAGACTTATTTTTGCTGGTAAGCAGCTCGAGGATGGTCGAACTCTCGCTGACTACAAT 19995819 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| || |||||||||||||| |||| Sbjct 19995820 ATTCAGAAGGAATCTACTCTGCATTTGGT 19995848 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||||||||| |||||||| | || || ||||| || ||| ||| |||| || Sbjct 19995412 ATGCAAATATTCGTAAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCT 19995471 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| |||||| || |||||||| | || || ||| Sbjct 19995472 GATACAATTGACAATGTAAAGGCAAAAATTCAAGATAAAGAGGGCATTCCACCCGACCAA 19995531 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || || ||| | || || ||| | |||||||| || Sbjct 19995532 CAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCGATTACAAT 19995591 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || || |||||||| || || |||| | ||| | || || ||||| Sbjct 19995592 ATCCAGAAGGAATCTACACTCCATTTGGTGCTTAGACTTCGCGGTGGGAT 19995641 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || || || || |||||||| || || || || || ||| ||| ||| Sbjct 19996095 AATGCAGATTTTCGTGAAGACATTAACAGGGAAGACAATCACATTGGAAGTCGAAAGTTC 19996154 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || | ||| || || ||||||||||| | || |||||| Sbjct 19996155 GGACACCATTGACAATGTGAAGGCGAAGATTCAAGACAAAGAGGGGATTCCTCCAGATCA 19996214 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||||||| |||||||| || ||||||||||| ||| | || |||| ||||| || Sbjct 19996215 ACAGAGACTGATCTTTGCTGGAAAACAATTGGAGGATGGTCGGACATTGGCTGATTACAA 19996274 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 || || ||||| || || || ||| Sbjct 19996275 TATCCAGAAAGAGTCCACACTCCAC 19996299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425403814922010